Concentrations
| ECMDB ID | Name | Concentration | Strain Media | Growth Status Growth System | Temperature | Citation |
|---|---|---|---|---|---|---|
| ECMDB04139 | Potassium | 225000± 25000 uM | K-12 Not Available | Not Available Not Available | Not Available | 1. Cybercell Database: http://ccdb.wishartlab.com/CCDB/cgi-bin/STAT_NEW.cgi 2. Phillips R., Kondev, J., Theriot, J. (2008) “Physical Biology of the Cell” Garland Science, New York, NY. |
| ECMDB02908 | Sodium | 5000± 0 uM | K-12 Not Available | Not Available Not Available | Not Available | 1. Cybercell Database: http://ccdb.wishartlab.com/CCDB/cgi-bin/STAT_NEW.cgi 2. Phillips R., Kondev, J., Theriot, J. (2008) “Physical Biology of the Cell” Garland Science, New York, NY. |
| ECMDB21195 | Calcium | 6000± 0 uM | K-12 Not Available | Not Available Not Available | Not Available | 1. Cybercell Database: http://ccdb.wishartlab.com/CCDB/cgi-bin/STAT_NEW.cgi 2. Phillips R., Kondev, J., Theriot, J. (2008) “Physical Biology of the Cell” Garland Science, New York, NY. |
| ECMDB04037 | Chloride | 6000± 0 uM | K-12 Not Available | Not Available Not Available | Not Available | 1. Cybercell Database: http://ccdb.wishartlab.com/CCDB/cgi-bin/STAT_NEW.cgi 2. Phillips R., Kondev, J., Theriot, J. (2008) “Physical Biology of the Cell” Garland Science, New York, NY. |
| ECMDB00547 | Magnesium | 10000± 0 uM | K-12 Not Available | Not Available Not Available | Not Available | 1. Cybercell Database: http://ccdb.wishartlab.com/CCDB/cgi-bin/STAT_NEW.cgi 2. Phillips R., Kondev, J., Theriot, J. (2008) “Physical Biology of the Cell” Garland Science, New York, NY. |
| ECMDB00692 | Iron | 18000± 0 uM | K-12 Not Available | Not Available Not Available | Not Available | 1. Cybercell Database: http://ccdb.wishartlab.com/CCDB/cgi-bin/STAT_NEW.cgi 2. Phillips R., Kondev, J., Theriot, J. (2008) “Physical Biology of the Cell” Garland Science, New York, NY. |
| ECMDB01333 | Manganese | 4000± 0 uM | K-12 Not Available | Not Available Not Available | Not Available | 1. Cybercell Database: http://ccdb.wishartlab.com/CCDB/cgi-bin/STAT_NEW.cgi 2. Phillips R., Kondev, J., Theriot, J. (2008) “Physical Biology of the Cell” Garland Science, New York, NY. |
| ECMDB01303 | Zinc | 4000± 0 uM | K-12 Not Available | Not Available Not Available | Not Available | 1. Cybercell Database: http://ccdb.wishartlab.com/CCDB/cgi-bin/STAT_NEW.cgi 2. Phillips R., Kondev, J., Theriot, J. (2008) “Physical Biology of the Cell” Garland Science, New York, NY. |
| ECMDB21390 | Molybdenum | 4000± 0 uM | K-12 Not Available | Not Available Not Available | Not Available | 1. Cybercell Database: http://ccdb.wishartlab.com/CCDB/cgi-bin/STAT_NEW.cgi 2. Phillips R., Kondev, J., Theriot, J. (2008) “Physical Biology of the Cell” Garland Science, New York, NY. |
| ECMDB00657 | Copper | 4000± 0 uM | K-12 Not Available | Not Available Not Available | Not Available | 1. Cybercell Database: http://ccdb.wishartlab.com/CCDB/cgi-bin/STAT_NEW.cgi 2. Phillips R., Kondev, J., Theriot, J. (2008) “Physical Biology of the Cell” Garland Science, New York, NY. |
| ECMDB01429 | Phosphate | 5000± 0 uM | K-12 Not Available | Not Available Not Available | Not Available | 1. Cybercell Database: http://ccdb.wishartlab.com/CCDB/cgi-bin/STAT_NEW.cgi 2. Phillips R., Kondev, J., Theriot, J. (2008) “Physical Biology of the Cell” Garland Science, New York, NY. |
| ECMDB00243 | Pyruvic acid | 900± 0 uM | K-12 Not Available | Not Available Not Available | Not Available | 1. Cybercell Database: http://ccdb.wishartlab.com/CCDB/cgi-bin/STAT_NEW.cgi 2. Phillips R., Kondev, J., Theriot, J. (2008) “Physical Biology of the Cell” Garland Science, New York, NY. |
| ECMDB01401 | Glucose 6-phosphate | 50± 0 uM | K-12 Not Available | Not Available Not Available | Not Available | 1. Cybercell Database: http://ccdb.wishartlab.com/CCDB/cgi-bin/STAT_NEW.cgi 2. Phillips R., Kondev, J., Theriot, J. (2008) “Physical Biology of the Cell” Garland Science, New York, NY. |
| ECMDB00538 | Adenosine triphosphate | 4150± 2850 uM | K-12 Not Available | Not Available Not Available | Not Available | 1. Cybercell Database: http://ccdb.wishartlab.com/CCDB/cgi-bin/STAT_NEW.cgi 2. Phillips R., Kondev, J., Theriot, J. (2008) “Physical Biology of the Cell” Garland Science, New York, NY. |
| ECMDB01341 | ADP | 170± 0 uM | K-12 Not Available | Not Available Not Available | Not Available | 1. Cybercell Database: http://ccdb.wishartlab.com/CCDB/cgi-bin/STAT_NEW.cgi 2. Phillips R., Kondev, J., Theriot, J. (2008) “Physical Biology of the Cell” Garland Science, New York, NY. |
| ECMDB00217 | NADP | 630± 0 uM | K-12 Not Available | Not Available Not Available | Not Available | 1. Cybercell Database: http://ccdb.wishartlab.com/CCDB/cgi-bin/STAT_NEW.cgi 2. Phillips R., Kondev, J., Theriot, J. (2008) “Physical Biology of the Cell” Garland Science, New York, NY. |
| ECMDB04111 | NADPH | 560± 0 uM | K-12 Not Available | Not Available Not Available | Not Available | 1. Cybercell Database: http://ccdb.wishartlab.com/CCDB/cgi-bin/STAT_NEW.cgi 2. Phillips R., Kondev, J., Theriot, J. (2008) “Physical Biology of the Cell” Garland Science, New York, NY. |
| ECMDB00126 | Glycerol 3-phosphate | 150± 50 uM | K-12 Not Available | Not Available Not Available | Not Available | 1. Cybercell Database: http://ccdb.wishartlab.com/CCDB/cgi-bin/STAT_NEW.cgi 2. Phillips R., Kondev, J., Theriot, J. (2008) “Physical Biology of the Cell” Garland Science, New York, NY. |
| ECMDB01276 | N1-Acetylspermidine | 430± 0 uM | K12 HB101 199 Medium with Earle’s salts –which contains 21 amino acids, 17 vitamins, 10 components of nucleic acids, sodium acetate, glucose, NaC1, KCl, CaC12, MgS04, Na2HP04, and Fe(N03)3 | Mid Log Phase Shake flask | 37 oC | PMID: 8742354 |
| ECMDB01316 | 6-Phosphogluconic acid | 310± 0 uM | W3110 4.0 g/L Na2SO4; 5.36 g/L (NH4)2SO4; 1.0 g/L NH4Cl; 7.3 g/L K2HPO4; 1.8 g/L NaH2PO4 H2O; 12.0 g/L (NH4)2-H-citrate; 4.0 mL/L MgSO4 (1 M); 6.0 mL/L trace element solution; 0.02 g/L thiamine, 20 g/L glucose | Mid Log Phase Bioreactor, pH controlled, aerated, dilution rate=0.125 L/h | 37 oC | Park, C., Park, C., Lee, Y., Lee, S.Y., Oh, H.B., Lee, J. (2011) Determination of the Intracellular Concentration of Metabolites in Escherichia coli Collected during the Exponential and Stationary Growth Phases using Liquid Chromatography-Mass Spectrometry. Bull Korean Chem. Soc. 32: 524-530. |
| ECMDB01414 | Putrescine | 2040± 0 uM | K12 HB101 199 Medium with Earle’s salts –which contains 21 amino acids, 17 vitamins, 10 components of nucleic acids, sodium acetate, glucose, NaC1, KCl, CaC12, MgS04, Na2HP04, and Fe(N03)3 | Mid Log Phase Shake flask | 37 oC | PMID: 8742354 |
| ECMDB01432 | Agmatine | 10± 0 uM | K12 HB101 199 Medium with Earle’s salts –which contains 21 amino acids, 17 vitamins, 10 components of nucleic acids, sodium acetate, glucose, NaC1, KCl, CaC12, MgS04, Na2HP04, and Fe(N03)3 | Mid Log Phase Shake flask | 37 oC | PMID: 8742354 |
| ECMDB01586 | Glucose 1-phosphate | 413± 0 uM | W3110 4.0 g/L Na2SO4; 5.36 g/L (NH4)2SO4; 1.0 g/L NH4Cl; 7.3 g/L K2HPO4; 1.8 g/L NaH2PO4 H2O; 12.0 g/L (NH4)2-H-citrate; 4.0 mL/L MgSO4 (1 M); 6.0 mL/L trace element solution; 0.02 g/L thiamine, 20 g/L glucose | Mid Log Phase Bioreactor, pH controlled, aerated, dilution rate=0.125 L/h | 37 oC | Park, C., Park, C., Lee, Y., Lee, S.Y., Oh, H.B., Lee, J. (2011) Determination of the Intracellular Concentration of Metabolites in Escherichia coli Collected during the Exponential and Stationary Growth Phases using Liquid Chromatography-Mass Spectrometry. Bull Korean Chem. Soc. 32: 524-530. |
| ECMDB02322 | Cadaverine | 1750± 0 uM | K12 HB101 199 Medium with Earle’s salts –which contains 21 amino acids, 17 vitamins, 10 components of nucleic acids, sodium acetate, glucose, NaC1, KCl, CaC12, MgS04, Na2HP04, and Fe(N03)3 | Mid Log Phase Shake flask | 37 oC | PMID: 8742354 |
| ECMDB02649 | D-Erythrose 4-phosphate | 1± 0 uM | W3110 4.0 g/L Na2SO4; 5.36 g/L (NH4)2SO4; 1.0 g/L NH4Cl; 7.3 g/L K2HPO4; 1.8 g/L NaH2PO4 H2O; 12.0 g/L (NH4)2-H-citrate; 4.0 mL/L MgSO4 (1 M); 6.0 mL/L trace element solution; 0.02 g/L thiamine, 20 g/L glucose | Mid Log Phase Bioreactor, pH controlled, aerated, dilution rate=0.125 L/h | 37 oC | Park, C., Park, C., Lee, Y., Lee, S.Y., Oh, H.B., Lee, J. (2011) Determination of the Intracellular Concentration of Metabolites in Escherichia coli Collected during the Exponential and Stationary Growth Phases using Liquid Chromatography-Mass Spectrometry. Bull Korean Chem. Soc. 32: 524-530. |