Metabolites
| Metabolite ID | Name CAS Number | IUPAC Name | SMPDB Pathways | Weight Formula | Structure |
|---|---|---|---|---|---|
| ECMDB00247 | Sorbitol 50-70-4 | (2R,3R,4R,5S)-hexane-1,2,3,4,5,6-hexol | Galactose metabolism PW000821 | 182.1718 C6H14O6 |  |
| ECMDB00251 | Taurine 107-35-7 | 2-aminoethane-1-sulfonic acid | 125.147 C2H7NO3S |  | |
| ECMDB00254 | Succinic acid 110-15-6 | butanedioic acid | Sulfur metabolism PW000922 More...Propanoate metabolism PW000940 2-Oxopent-4-enoate metabolism PW001890 Collection of Reactions without pathways PW001891 Gluconeogenesis from L-malic acid PW000819 L-glutamate metabolism PW000789 Secondary Metabolites: Glyoxylate cycle PW000967 TCA cycle PW000779 TCA cycle (ubiquinol-10) PW001010 TCA cycle (ubiquinol-2) PW001002 TCA cycle (ubiquinol-3) PW001003 TCA cycle (ubiquinol-4) PW001004 TCA cycle (ubiquinol-5) PW001005 TCA cycle (ubiquinol-6) PW001006 TCA cycle (ubiquinol-7) PW001007 TCA cycle (ubiquinol-8) PW001008 TCA cycle (ubiquinol-9) PW001009 Taurine Metabolism PW000774 Taurine Metabolism I PW001028 arginine metabolism PW000790 inner membrane transport PW000786 methionine biosynthesis PW000814 ornithine metabolism PW000791 sulfur metabolism (butanesulfonate) PW000923 sulfur metabolism (ethanesulfonate) PW000925 sulfur metabolism (isethionate) PW000926 sulfur metabolism (methanesulfonate) PW000927 sulfur metabolism (propanesulfonate) PW000924 TCA cycle (ubiquinol-0) PW002023 glycolate and glyoxylate degradation II PW002021 2-Oxopent-4-enoate metabolism 2 PW002035 4-aminobutanoate degradation I PW002068 Conversion of Succinate to Propanoate PW002058 propanoyl CoA degradation PW002057 | 118.088 C4H6O4 |  |
| ECMDB00257 | Thiosulfate 14383-50-7 | sulfanesulfonic acid | 112.128 O3S2 |  | |
| ECMDB00258 | Sucrose 57-50-1 | (2R,3R,4S,5S,6R)-2-{[(2S,3S,4S,5R)-3,4-dihydroxy-2,5-bis(hydroxymethyl)oxolan-2-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol | 342.2965 C12H22O11 |  | |
| ECMDB00262 | Thymine 65-71-4 | 5-methyl-1,2,3,4-tetrahydropyrimidine-2,4-dione | 126.1133 C5H6N2O2 |  | |
| ECMDB00263 | Phosphoenolpyruvic acid 138-08-9 | 2-(phosphonooxy)prop-2-enoic acid | Lipopolysaccharide biosynthesis PW000831 Amino sugar and nucleotide sugar metabolism I PW000886 Chorismate biosynthesis PW000816 Gluconeogenesis from L-malic acid PW000819 More...Secondary Metabolites: Shikimate Pathway PW000985 fructose metabolism PW000913 glycerol metabolism PW000914 glycerol metabolism II PW000915 glycerol metabolism III (sn-glycero-3-phosphoethanolamine) PW000916 glycerol metabolism IV (glycerophosphoglycerol) PW000917 glycerol metabolism V (glycerophosphoserine) PW000918 glycolysis and pyruvate dehydrogenase PW000785 peptidoglycan biosynthesis I PW000906 superpathway of D-glucarate and D-galactarate degradation PW000795 lipopolysaccharide biosynthesis II PW001905 lipopolysaccharide biosynthesis III PW002059 peptidoglycan biosynthesis I 2 PW002062 | 168.042 C3H5O6P |  |
| ECMDB00271 | Sarcosine 107-97-1 | 2-(methylamino)acetic acid | 89.0932 C3H7NO2 |  | |
| ECMDB00272 | Phosphoserine 407-41-0 | (2S)-2-amino-3-(phosphonooxy)propanoic acid | 185.0725 C3H8NO6P |  | |
| ECMDB00273 | Thymidine 50-89-5 | 1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-methyl-1,2,3,4-tetrahydropyrimidine-2,4-dione | 242.2286 C10H14N2O5 |  | |
| ECMDB00280 | Phosphoribosyl pyrophosphate 7540-64-9 | [({[(2R,3R,4S,5R)-3,4-dihydroxy-5-[(phosphonooxy)methyl]oxolan-2-yl]oxy}(hydroxy)phosphoryl)oxy]phosphonic acid | NAD salvage PW000830 More...PRPP Biosynthesis PW000909 Secondary Metabolites: Histidine biosynthesis PW000984 histidine biosynthesis PW000810 purine nucleotides de novo biosynthesis PW000910 purine nucleotides de novo biosynthesis 1435709748 PW000960 tryptophan metabolism II PW001916 Thiamin diphosphate biosynthesis PW002028 adenine and adenosine salvage I PW002069 adenine and adenosine salvage III PW002072 guanine and guanosine salvage PW002074 purine nucleotides de novo biosynthesis 2 PW002033 purine ribonucleosides degradation PW002076 | 390.0696 C5H13O14P3 |  |
| ECMDB00283 | Ribose 50-69-1 | (3R,4S,5R)-5-(hydroxymethyl)oxolane-2,3,4-triol | 150.1299 C5H10O5 |  | |
| ECMDB00285 | Uridine triphosphate 63-39-8 | ({[({[(2R,3S,4R,5R)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)phosphonic acid | Lipopolysaccharide biosynthesis PW000831 More...Amino sugar and nucleotide sugar metabolism I PW000886 Amino sugar and nucleotide sugar metabolism III PW000895 colanic acid building blocks biosynthesis PW000951 galactose degradation/Leloir Pathway PW000884 peptidoglycan biosynthesis I PW000906 lipopolysaccharide biosynthesis II PW001905 1,6-anhydro-N-acetylmuramic acid recycling PW002064 lipopolysaccharide biosynthesis III PW002059 peptidoglycan biosynthesis I 2 PW002062 O-antigen building blocks biosynthesis PW002089 | 484.1411 C9H15N2O15P3 |  |
| ECMDB00288 | Uridine 5'-monophosphate 58-97-9 | {[(2R,3S,4R,5R)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}phosphonic acid | Pyrimidine metabolism PW000942 Lipopolysaccharide biosynthesis PW000831 Secondary Metabolites: enterobacterial common antigen biosynthesis PW000959 peptidoglycan biosynthesis I PW000906 More...lipopolysaccharide biosynthesis II PW001905 Secondary Metabolites: enterobacterial common antigen biosynthesis 2 PW002045 Secondary Metabolites: enterobacterial common antigen biosynthesis 3 PW002046 lipopolysaccharide biosynthesis III PW002059 peptidoglycan biosynthesis I 2 PW002062 | 324.1813 C9H13N2O9P |  |
| ECMDB00289 | Uric acid 69-93-2 | 2,3,6,7,8,9-hexahydro-1H-purine-2,6,8-trione | adenosine nucleotides degradation PW002091 | 168.1103 C5H4N4O3 |  |
| ECMDB00290 | Uridine diphosphate-N-acetylglucosamine 528-04-1 | [({[(2R,3S,4R,5R)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]({[(2R,3R,4R,5S,6R)-3-acetamido-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphinic acid | Lipopolysaccharide biosynthesis PW000831 Amino sugar and nucleotide sugar metabolism I PW000886 Secondary Metabolites: enterobacterial common antigen biosynthesis PW000959 peptidoglycan biosynthesis I PW000906 More...lipopolysaccharide biosynthesis II PW001905 1,6-anhydro-N-acetylmuramic acid recycling PW002064 Secondary Metabolites: enterobacterial common antigen biosynthesis 2 PW002045 Secondary Metabolites: enterobacterial common antigen biosynthesis 3 PW002046 lipopolysaccharide biosynthesis III PW002059 peptidoglycan biosynthesis I 2 PW002062 O-antigen building blocks biosynthesis PW002089 | 607.3537 C17H27N3O17P2 |  |
| ECMDB00292 | Xanthine 69-89-6 | 2,3,6,7-tetrahydro-1H-purine-2,6-dione | 152.1109 C5H4N4O2 |  | |
| ECMDB00293 | Xanthosine 5-triphosphate 6253-56-1 | ({[({[(2R,3S,4R,5R)-5-(2,6-dihydroxy-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)phosphonic acid | Collection of Reactions without pathways PW001891 | 524.1652 C10H15N4O15P3 |  |
| ECMDB00295 | Uridine 5'-diphosphate 58-98-0 | [({[(2R,3S,4R,5R)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]phosphonic acid | Pyrimidine metabolism PW000942 Starch and sucrose metabolism PW000941 Lipopolysaccharide biosynthesis PW000831 Amino sugar and nucleotide sugar metabolism III PW000895 More...Secondary Metabolites: enterobacterial common antigen biosynthesis PW000959 peptidoglycan biosynthesis I PW000906 lipopolysaccharide biosynthesis II PW001905 Secondary Metabolites: enterobacterial common antigen biosynthesis 2 PW002045 Secondary Metabolites: enterobacterial common antigen biosynthesis 3 PW002046 lipopolysaccharide biosynthesis III PW002059 peptidoglycan biosynthesis I 2 PW002062 polymyxin resistance PW002052 trehalose biosynthesis I PW002088 | 404.1612 C9H14N2O12P2 |  |
| ECMDB00296 | Uridine 58-96-8 | 1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-1,2,3,4-tetrahydropyrimidine-2,4-dione | 244.2014 C9H12N2O6 |  | |
| ECMDB00299 | Xanthosine 146-80-5 | 9-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-9H-purine-2,6-diol | purine ribonucleosides degradation PW002076 | 284.2255 C10H12N4O6 |  |
| ECMDB00300 | Uracil 66-22-8 | 1,2,3,4-tetrahydropyrimidine-2,4-dione | 112.0868 C4H4N2O2 |  | |
| ECMDB00302 | Uridine diphosphategalactose 2956-16-3 | [({[(2S,3R,4R,5R)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]({[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphinic acid | 566.3018 C15H24N2O17P2 |  | |
| ECMDB00306 | Tyramine 51-67-2 | 4-(2-aminoethyl)phenol | 137.179 C8H11NO |  | |
| ECMDB00318 | 3,4-Dihydroxyphenylglycol 28822-73-3 | 4-(1,2-dihydroxyethyl)benzene-1,2-diol | 170.1626 C8H10O4 |  |