ECMDB: Uncharacterized tRNA/rRNA methyltransferase yibK (P0AGJ7)

Identification

Name:

Uncharacterized tRNA/rRNA methyltransferase yibK

Synonyms:

Not Available

Gene Name:

yibK

Enzyme Class:

2.1.1.207

Biological Properties

General Function:

Translation, ribosomal structure and biogenesis

Specific Function:

Not Available

Cellular Location:

Cytoplasmic

SMPDB Pathways:

Not Available

KEGG Pathways:

Not Available

Metabolites:

ECMDB ID	Name	View
ECMDB00939	S-Adenosylhomocysteine	MetaboCard

GO Classification:

Function
binding
catalytic activity
methyltransferase activity
nucleic acid binding
RNA binding
RNA methyltransferase activity
transferase activity
transferase activity, transferring one-carbon groups
Process
cellular macromolecule metabolic process
macromolecule metabolic process
metabolic process
RNA metabolic process
RNA processing

Gene Properties

Blattner:

Not Available

Gene Orientation

Not Available

Centisome Percentage:

Not Available

Left Sequence End

Not Available

Right Sequence End

Not Available

Gene Sequence:

>474 bp
ATGAAAAAAATACTCGAAGCAATACTGGCGATTAATCTCGCCGTACTTTCCTGTATTGTA
TTTATAAACATTATTTTAAGATATGGTTTTCAGACAAGCATTTTATCTGTTGATGAATTG
TCACGTTATTTATTTGTCTGGTTAACGTTTATTGGCGCGATTGTAGCTTTTATGGATAAC
GCCCACGTTCAGGTCACCTTTCTGGTGGAGAAACTCTCCCCCGCATGGCAGCGACGAGTC
GCTCTGGTTACCCATTCCTTAATCTTATTTATTTGTGGCGCACTGGCCTGGGGCGCAACG
CTAAAAACAATTCAGGACTGGAGCGATTATTCACCGATCCTCGGTTTACCCATCGGCCTG
ATGTATGCCGCTTGTCTGCCCACCAGCCTCGTTATCGCATTCTTTGAACTGCGTCATTTA
TATCAACTCATCACGCGTAGCAATTCTCTAACGTCGCCACCGCAAGGAGCTTAA

Protein Properties

Pfam Domain Function:

SpoU_methylase (PF00588 )

Protein Residues:

157

Protein Molecular Weight:

17726

Protein Theoretical pI:

Signaling Regions:

None

Transmembrane Regions:

None

Protein Sequence:

>Uncharacterized tRNA/rRNA methyltransferase yibK
MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH
HDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQKI
RIPMVPDSRSMNLSNAVSVVVYEAWRQLGYPGAVLRD

References

External Links:

Resource	Link
Uniprot ID:	P0AGJ7
Uniprot Name:	YIBK_ECOLI
GenBank Gene ID:	U00039
Genebank Protein ID:	466715
CCDB:	YIBK_ECOLI

General Reference:

Blattner, F. R., Plunkett, G. 3rd, Bloch, C. A., Perna, N. T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J. D., Rode, C. K., Mayhew, G. F., Gregor, J., Davis, N. W., Kirkpatrick, H. A., Goeden, M. A., Rose, D. J., Mau, B., Shao, Y. (1997). "The complete genome sequence of Escherichia coli K-12." Science 277:1453-1462. Pubmed: 9278503
Dong, J. M., Taylor, J. S., Latour, D. J., Iuchi, S., Lin, E. C. (1993). "Three overlapping lct genes involved in L-lactate utilization by Escherichia coli." J Bacteriol 175:6671-6678. Pubmed: 8407843
Hayashi, K., Morooka, N., Yamamoto, Y., Fujita, K., Isono, K., Choi, S., Ohtsubo, E., Baba, T., Wanner, B. L., Mori, H., Horiuchi, T. (2006). "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Mol Syst Biol 2:2006.0007. Pubmed: 16738553
Koonin, E. V., Rudd, K. E. (1993). "SpoU protein of Escherichia coli belongs to a new family of putative rRNA methylases." Nucleic Acids Res 21:5519. Pubmed: 8265370
Sofia, H. J., Burland, V., Daniels, D. L., Plunkett, G. 3rd, Blattner, F. R. (1994). "Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes." Nucleic Acids Res 22:2576-2586. Pubmed: 8041620
Tei, H., Murata, K., Kimura, A. (1990). "Structure and expression of cysX, the second gene in the Escherichia coli K-12 cysE locus." Biochem Biophys Res Commun 167:948-955. Pubmed: 2108679