Filter by identifiers:
Displaying metabolites 1 - 25 of 3760 in total
Metabolite ID Name
CAS Number
IUPAC NameSMPDB PathwaysWeight
Formula
Structure
ECMDB000052-Ketobutyric acid

600-18-0
2-oxobutanoic acid
Propanoate metabolism PW000940
isoleucine biosynthesis PW000818
102.0886

C4H6O3
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ECMDB00012Deoxyuridine

951-78-0
1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-1,2,3,4-tetrahydropyrimidine-2,4-dione
Pyrimidine metabolism PW000942
pyrimidine deoxyribonucleosides degradation PW002063
salvage pathways of pyrimidine deoxyribonucleotides PW002061
228.202

C9H12N2O5
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ECMDB00014Deoxycytidine

951-77-9
4-amino-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-1,2-dihydropyrimidin-2-one
Pyrimidine metabolism PW000942
pyrimidine deoxyribonucleosides degradation PW002063
salvage pathways of pyrimidine deoxyribonucleotides PW002061
227.2172

C9H13N3O4
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ECMDB00019a-Ketoisovaleric acid

759-05-7
3-methyl-2-oxobutanoic acid
Pantothenate and CoA biosynthesis PW000828
L-alanine metabolism PW000788
116.1152

C5H8O3
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ECMDB000233-Hydroxyisobutyric acid

2068-83-9
3-hydroxy-2-methylpropanoic acid
104.1045

C4H8O3
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ECMDB00026Ureidopropionic acid

462-88-4
3-(carbamoylamino)propanoic acid
Pyrimidine metabolism PW000942
Pantothenate and CoA biosynthesis PW000828
beta-Alanine metabolism PW000896
132.1179

C4H8N2O3
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ECMDB00030Biotin

58-85-5
5-[(3aS,4S,6aR)-2-oxo-hexahydro-1H-thieno[3,4-d]imidazolidin-4-yl]pentanoic acid
Biotin metabolism PW000762
biotin-carboxyl carrier protein assembly PW002067
244.311

C10H16N2O3S
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ECMDB00034Adenine

73-24-5
7H-purin-6-amine
Pantothenate and CoA biosynthesis PW000828
Collection of Reactions without pathways PW001891
Quorum Sensing PW000836
S-adenosyl-L-methionine biosynthesis PW000837
preQ0 metabolism PW001893
Citrate lyase activation PW002075
adenine and adenosine salvage I PW002069
adenine and adenosine salvage II PW002071
adenine and adenosine salvage III PW002072
methylphosphonate degradation I PW002065
purine deoxyribonucleosides degradation PW002077
purine ribonucleosides degradation PW002076
S-adenosyl-L-methionine cycle PW002080
Spermidine biosynthesis and metabolism PW002085
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135.1267

C5H5N5
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ECMDB00039Butyric acid

107-92-6
butanoic acid
fatty acid oxidation (Butanoate) PW001017
88.1051

C4H8O2
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ECMDB00042Acetic acid

64-19-7
acetic acid
Galactose metabolism PW000821
Sulfur metabolism PW000922
Lipopolysaccharide biosynthesis PW000831
Propanoate metabolism PW000940
Amino sugar and nucleotide sugar metabolism I PW000886
Amino sugar and nucleotide sugar metabolism II PW000887
Amino sugar and nucleotide sugar metabolism III PW000895
Aminobenzoate Degradation PW000757
Secondary Metabolites: cysteine biosynthesis from serine PW000977
arginine metabolism PW000790
cysteine biosynthesis PW000800
ornithine metabolism PW000791
sulfur metabolism (butanesulfonate) PW000923
sulfur metabolism (ethanesulfonate) PW000925
sulfur metabolism (isethionate) PW000926
sulfur metabolism (methanesulfonate) PW000927
sulfur metabolism (propanesulfonate) PW000924
lipopolysaccharide biosynthesis II PW001905
1,6-anhydro-N-acetylmuramic acid recycling PW002064
Chitobiose Degradation PW002042
Citrate lyase activation PW002075
N-acetylneuraminate and N-acetylmannosamine and N-acetylglucosamine degradation PW002030
lipopolysaccharide biosynthesis III PW002059
Acetate metabolism PW002090
pyruvate to cytochrome bd terminal oxidase electron transfer PW002087
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60.052

C2H4O2
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ECMDB00044Ascorbic acid

50-81-7
(2S)-2-[(1R)-1,2-dihydroxyethyl]-4,5-dihydroxy-2,3-dihydrofuran-3-one
Glutathione metabolism PW000833
Ascorbate metabolism PW000793
176.1241

C6H8O6
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ECMDB00045Adenosine monophosphate

61-19-8
{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}phosphonic acid
Nitrogen metabolism PW000755
Pyrimidine metabolism PW000942
Phenylalanine metabolism PW000921
Folate biosynthesis PW000908
Pantothenate and CoA biosynthesis PW000828
Sulfur metabolism PW000922
Tryptophan metabolism PW000815
Biotin metabolism PW000762
beta-Alanine metabolism PW000896
Propanoate metabolism PW000940
Fatty acid biosynthesis PW000900
Biosynthesis of siderophore group nonribosomal peptides PW000760
Fatty acid metabolism PW000796
Lipoic acid metabolism PW000770
Asparagine biosynthesis PW000813
Aspartate metabolism PW000787
GTP degradation PW001888
Gluconeogenesis from L-malic acid PW000819
Menaquinol biosythesis PW001897
NAD biosynthesis PW000829
NAD salvage PW000830
PRPP Biosynthesis PW000909
Porphyrin metabolism PW000936
Selenium metabolism PW001894
arginine metabolism PW000790
fatty acid oxidation PW000758
fatty acid oxidation (Decanoate) PW001018
fatty acid oxidation (hexanoate) PW001019
fatty acid oxidation (laurate) PW001020
fatty acid oxidation (myristate) PW001021
fatty acid oxidation (octanoate) PW001022
fatty acid oxidation (palmitate) PW001023
fatty acid oxidation (steareate) PW001024
fructose metabolism PW000913
glycerol metabolism PW000914
glycerol metabolism II PW000915
glycerol metabolism III (sn-glycero-3-phosphoethanolamine) PW000916
glycerol metabolism IV (glycerophosphoglycerol) PW000917
glycerol metabolism V (glycerophosphoserine) PW000918
glycolysis and pyruvate dehydrogenase PW000785
purine nucleotides de novo biosynthesis PW000910
purine nucleotides de novo biosynthesis 1435709748 PW000960
superpathway of D-glucarate and D-galactarate degradation PW000795
tRNA Charging 2 PW000803
tRNA charging PW000799
Phenylethylamine metabolism PW002027
Citrate lyase activation PW002075
D-arabinose degradation I PW002038
Enterobactin Biosynthesis PW002048
L-carnitine degradation I PW002037
adenine and adenosine salvage III PW002072
biotin-carboxyl carrier protein assembly PW002067
purine nucleotides de novo biosynthesis 2 PW002033
Acetate metabolism PW002090
adenosine nucleotides degradation PW002091
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347.2212

C10H14N5O7P
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ECMDB00048Melibiose

585-99-9
(3R,4S,5S,6R)-6-({[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxane-2,3,4,5-tetrol
Galactose metabolism PW000821
inner membrane transport PW000786
342.2965

C12H22O11
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ECMDB00050Adenosine

58-61-7
(2R,3R,4S,5R)-2-(6-amino-9H-purin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol
adenine and adenosine salvage I PW002069
adenine and adenosine salvage II PW002071
adenine and adenosine salvage III PW002072
purine ribonucleosides degradation PW002076
adenosine nucleotides degradation PW002091
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267.2413

C10H13N5O4
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ECMDB00051Ammonia

7664-41-7
ammonia
Nitrogen metabolism PW000755
Pyrimidine metabolism PW000942
Phenylalanine metabolism PW000921
Folate biosynthesis PW000908
Sulfur metabolism PW000922
Tryptophan metabolism PW000815
One carbon pool by folate PW000773
beta-Alanine metabolism PW000896
D-Glutamine and D-glutamate metabolism PW000769
Aspartate metabolism PW000787
L-glutamate metabolism PW000789
L-glutamate metabolism II PW001886
One Carbon Pool by Folate I PW001735
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17.0305

H3N
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ECMDB00055Cellobiose

528-50-7
(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-{[(2R,3S,4R,5R,6R)-4,5,6-trihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy}oxane-3,4,5-triol
Starch and sucrose metabolism PW000941
342.2965

C12H22O11
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ECMDB00056beta-Alanine

107-95-9
3-aminopropanoic acid
Pyrimidine metabolism PW000942
Pantothenate and CoA biosynthesis PW000828
beta-Alanine metabolism PW000896
Propanoate metabolism PW000940
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89.0932

C3H7NO2
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ECMDB00058Cyclic AMP

60-92-4
(4aR,6R,7R,7aS)-6-(6-amino-9H-purin-9-yl)-2,7-dihydroxy-hexahydro-2λ⁵-furo[3,2-d][1,3,2]dioxaphosphinin-2-one
Lac Operon PW000955
Lac Operon Inactivation 2 PW000956
329.2059

C10H12N5O6P
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ECMDB00060Acetoacetic acid

541-50-4
3-oxobutanoic acid
Propanoate metabolism PW000940
Acetate metabolism PW002090
102.0886

C4H6O3
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ECMDB00061Adenosine 3',5'-diphosphate

1053-73-2
{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}phosphonic acid
Pantothenate and CoA biosynthesis PW000828
Sulfur metabolism PW000922
cysteine biosynthesis PW000800
sulfur metabolism (butanesulfonate) PW000923
sulfur metabolism (ethanesulfonate) PW000925
sulfur metabolism (isethionate) PW000926
sulfur metabolism (methanesulfonate) PW000927
sulfur metabolism (propanesulfonate) PW000924
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427.2011

C10H15N5O10P2
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ECMDB00062Carnitine

541-15-1
(3-carboxy-2-hydroxypropyl)trimethylazanium
162.2068

C7H16NO3
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ECMDB00071Deoxyinosine

890-38-0
9-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-9H-purin-6-ol
purine deoxyribonucleosides degradation PW002077
252.2267

C10H12N4O4
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ECMDB00072cis-Aconitic acid

585-84-2
(1Z)-prop-1-ene-1,2,3-tricarboxylic acid
Secondary Metabolites: Glyoxylate cycle PW000967
TCA cycle PW000779
TCA cycle (ubiquinol-10) PW001010
TCA cycle (ubiquinol-2) PW001002
TCA cycle (ubiquinol-3) PW001003
TCA cycle (ubiquinol-4) PW001004
TCA cycle (ubiquinol-5) PW001005
TCA cycle (ubiquinol-6) PW001006
TCA cycle (ubiquinol-7) PW001007
TCA cycle (ubiquinol-8) PW001008
TCA cycle (ubiquinol-9) PW001009
TCA cycle (ubiquinol-0) PW002023
glycolate and glyoxylate degradation II PW002021
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174.1082

C6H6O6
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ECMDB00073Dopamine

62-31-7
4-(2-aminoethyl)benzene-1,2-diol
153.1784

C8H11NO2
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ECMDB00076Dihydrouracil

504-07-4
1,3-diazinane-2,4-dione
Pyrimidine metabolism PW000942
Pantothenate and CoA biosynthesis PW000828
beta-Alanine metabolism PW000896
114.1026

C4H6N2O2
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Displaying metabolites 1 - 25 of 3760 in total