<?xml version="1.0" encoding="UTF-8"?>
<compound>
  <version>2.0</version>
  <creation_date>2012-07-30 14:55:41 -0600</creation_date>
  <update_date>2015-09-17 15:41:05 -0600</update_date>
  <accession>ECMDB21386</accession>
  <m2m_id>M2MDB001781</m2m_id>
  <name>Cyanocobalamin</name>
  <description>B12 is the most chemically complex of all the vitamins. B12's structure is based on a corrin ring, which, although similar to the porphyrin ring found in heme, chlorophyll, and cytochrome, has two of the pyrrole rings directly bonded. The central metal ion is Co (cobalt). Vitamin B12 cannot be made by plants or by animals, as the only type of organisms that have the enzymes required for the synthesis of B12 are bacteria and archaea. Higher plants do not concentrate vitamin B 12 from the soil and so are a poor source of the substance as compared with animal tissues. </description>
  <synonyms>
    <synonym>Alphamine</synonym>
    <synonym>Anacobin</synonym>
    <synonym>Berubigen</synonym>
    <synonym>Betalin 12 Crystalline</synonym>
    <synonym>Betaline-12</synonym>
    <synonym>Betolvex</synonym>
    <synonym>Bevidox</synonym>
    <synonym>Bevidox concentrate</synonym>
    <synonym>Bevidox concentric acid</synonym>
    <synonym>Biocobalamine</synonym>
    <synonym>Byladoce</synonym>
    <synonym>Cabadon m</synonym>
    <synonym>Cobadoce forte</synonym>
    <synonym>Cobalin</synonym>
    <synonym>Cobavite</synonym>
    <synonym>Copharvit 5000</synonym>
    <synonym>Covit</synonym>
    <synonym>Crystamin</synonym>
    <synonym>Crystamine</synonym>
    <synonym>Crystimin</synonym>
    <synonym>Crystwel</synonym>
    <synonym>Cyano-B12</synonym>
    <synonym>Cyanobalamin concentrate</synonym>
    <synonym>Cyanobalamin concentric acid</synonym>
    <synonym>Cyanocob(III)alamin</synonym>
    <synonym>Cyanocobalamin</synonym>
    <synonym>Cyanocobalamin (JP15/USP)</synonym>
    <synonym>Cyanocobalamine</synonym>
    <synonym>Cyanocobalmin</synonym>
    <synonym>Cyanoject</synonym>
    <synonym>Cycobemin</synonym>
    <synonym>Cycolamin</synonym>
    <synonym>Cykobemin</synonym>
    <synonym>Cykobeminet</synonym>
    <synonym>Cyomin</synonym>
    <synonym>Cyredin</synonym>
    <synonym>Cytacon</synonym>
    <synonym>Cytamen</synonym>
    <synonym>Cytobion</synonym>
    <synonym>Depinar</synonym>
    <synonym>Dicopac</synonym>
    <synonym>Dimethylbenzimidazoylcobamide</synonym>
    <synonym>Distivit</synonym>
    <synonym>Docemine</synonym>
    <synonym>Docibin</synonym>
    <synonym>Docivit</synonym>
    <synonym>Dodecabee</synonym>
    <synonym>Dodecavite</synonym>
    <synonym>Dodex</synonym>
    <synonym>Duodecibin</synonym>
    <synonym>Embiol</synonym>
    <synonym>Emociclina</synonym>
    <synonym>Eritrone</synonym>
    <synonym>Erycytol</synonym>
    <synonym>Erythrotin</synonym>
    <synonym>Euhaemon</synonym>
    <synonym>Extrinsic factor</synonym>
    <synonym>Factor II</synonym>
    <synonym>Fermin</synonym>
    <synonym>Fresmin</synonym>
    <synonym>Hemomin</synonym>
    <synonym>Hepagon</synonym>
    <synonym>Hepavis</synonym>
    <synonym>Hepcovite</synonym>
    <synonym>Hydrobexan</synonym>
    <synonym>Hylugel plus</synonym>
    <synonym>Lactobacillus lactis dorner factor</synonym>
    <synonym>Macrabin</synonym>
    <synonym>Megabion</synonym>
    <synonym>Megalovel</synonym>
    <synonym>Milbedoce</synonym>
    <synonym>Millevit</synonym>
    <synonym>Nagravon</synonym>
    <synonym>Nascobal</synonym>
    <synonym>Nascobal (TN)</synonym>
    <synonym>Normocytin</synonym>
    <synonym>Novidroxin</synonym>
    <synonym>Pernaemon</synonym>
    <synonym>Pernaevit</synonym>
    <synonym>Pernipuron</synonym>
    <synonym>Plecyamin</synonym>
    <synonym>Poyamin</synonym>
    <synonym>Rebramin</synonym>
    <synonym>Redamina</synonym>
    <synonym>Redisol</synonym>
    <synonym>Rhodacryst</synonym>
    <synonym>Rubesol</synonym>
    <synonym>Rubramin</synonym>
    <synonym>Rubripca</synonym>
    <synonym>Rubrocitol</synonym>
    <synonym>Sytobex</synonym>
    <synonym>Vibalt</synonym>
    <synonym>Vibisone</synonym>
    <synonym>Virubra</synonym>
    <synonym>Vita-rubra</synonym>
    <synonym>Vitamin B12</synonym>
    <synonym>Vitamin B12 Preparation</synonym>
    <synonym>Vitarubin</synonym>
    <synonym>Vitral</synonym>
  </synonyms>
  <chemical_formula>C63H89CoN14O14P</chemical_formula>
  <average_molecular_weight>1356.3731</average_molecular_weight>
  <monisotopic_moleculate_weight>1355.575230332</monisotopic_moleculate_weight>
  <iupac_name>cyanocobalamin</iupac_name>
  <traditional_iupac>cyanocobalamin</traditional_iupac>
  <cas_registry_number>68-19-9</cas_registry_number>
  <smiles>OC[C@H]1O[C@@H]([C@H](O)[C@@H]1OP(O)(=O)O[C@]([H])(C)CNC(=O)CC[C@]1(C)[C@@H](CC(=O)N)[C@@]2([H])N([Co]C#N)\C1=C(C)/C1=N/C(=C\C3=N\C(=C(C)/C4=N[C@]2(C)[C@@](C)(CC(=O)N)[C@@H]4CCC(=O)N)\[C@@](C)(CC(=O)N)[C@@H]3CCC(=O)N)/C(C)(C)[C@@H]1CCC(=O)N)N1C=NC2=CC(C)=C(C)C=C12</smiles>
  <inchi>InChI=1S/C62H90N13O14P.CN.Co/c1-29-20-39-40(21-30(29)2)75(28-70-39)57-52(84)53(41(27-76)87-57)89-90(85,86)88-31(3)26-69-49(83)18-19-59(8)37(22-46(66)80)56-62(11)61(10,25-48(68)82)36(14-17-45(65)79)51(74-62)33(5)55-60(9,24-47(67)81)34(12-15-43(63)77)38(71-55)23-42-58(6,7)35(13-16-44(64)78)50(72-42)32(4)54(59)73-56;1-2;/h20-21,23,28,31,34-37,41,52-53,56-57,76,84H,12-19,22,24-27H2,1-11H3,(H15,63,64,65,66,67,68,69,71,72,73,74,77,78,79,80,81,82,83,85,86);;/q;;+1/p-1/t31-,34-,35-,36-,37+,41-,52-,53-,56-,57+,59-,60+,61+,62+;;/m1../s1</inchi>
  <inchikey>SEKGMJVHSBBHRD-WZHZPDAFSA-M</inchikey>
  <state>Solid</state>
  <cellular_locations>
    <cellular_location>Cytoplasm</cellular_location>
  </cellular_locations>
  <predicted_properties>
    <property>
      <kind>logp</kind>
      <value>1.87</value>
      <source>ALOGPS</source>
    </property>
    <property>
      <kind>logs</kind>
      <value>-4.55</value>
      <source>ALOGPS</source>
    </property>
    <property>
      <kind>solubility</kind>
      <value>3.84e-02 g/l</value>
      <source>ALOGPS</source>
    </property>
  </predicted_properties>
  <experimental_properties>
    <property>
      <kind>melting_point</kind>
      <value>&gt;300 oC</value>
    </property>
  </experimental_properties>
  <property>
    <kind>pka_strongest_acidic</kind>
    <value>1.82</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>pka_strongest_basic</kind>
    <value>13.57</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>iupac</kind>
    <value>cyanocobalamin</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>average_mass</kind>
    <value>1356.3731</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>mono_mass</kind>
    <value>1355.575230332</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>smiles</kind>
    <value>OC[C@H]1O[C@@H]([C@H](O)[C@@H]1OP(O)(=O)O[C@]([H])(C)CNC(=O)CC[C@]1(C)[C@@H](CC(=O)N)[C@@]2([H])N([Co]C#N)\C1=C(C)/C1=N/C(=C\C3=N\C(=C(C)/C4=N[C@]2(C)[C@@](C)(CC(=O)N)[C@@H]4CCC(=O)N)\[C@@](C)(CC(=O)N)[C@@H]3CCC(=O)N)/C(C)(C)[C@@H]1CCC(=O)N)N1C=NC2=CC(C)=C(C)C=C12</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>formula</kind>
    <value>C63H89CoN14O14P</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>inchi</kind>
    <value>InChI=1S/C62H90N13O14P.CN.Co/c1-29-20-39-40(21-30(29)2)75(28-70-39)57-52(84)53(41(27-76)87-57)89-90(85,86)88-31(3)26-69-49(83)18-19-59(8)37(22-46(66)80)56-62(11)61(10,25-48(68)82)36(14-17-45(65)79)51(74-62)33(5)55-60(9,24-47(67)81)34(12-15-43(63)77)38(71-55)23-42-58(6,7)35(13-16-44(64)78)50(72-42)32(4)54(59)73-56;1-2;/h20-21,23,28,31,34-37,41,52-53,56-57,76,84H,12-19,22,24-27H2,1-11H3,(H15,63,64,65,66,67,68,69,71,72,73,74,77,78,79,80,81,82,83,85,86);;/q;;+1/p-1/t31-,34-,35-,36-,37+,41-,52-,53-,56-,57+,59-,60+,61+,62+;;/m1../s1</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>inchikey</kind>
    <value>SEKGMJVHSBBHRD-WZHZPDAFSA-M</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>polar_surface_area</kind>
    <value>487.61</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>polarizability</kind>
    <value>137.36</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>acceptor_count</kind>
    <value>15</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>donor_count</kind>
    <value>10</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>physiological_charge</kind>
    <value>0</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>formal_charge</kind>
    <value>0</value>
    <source>ChemAxon</source>
  </property>
  <pathways>
    <pathway>
      <name>adenosylcobalamin salvage from cobinamide</name>
      <description>Cobinamide is incorporated from the extracellular space through a transport system into the cytosol. Once inside the cytosol, cobinamide interacts with ATP through a cobinamide adenosyl transferase resulting in the release of a triphosphate and an adenosylcobinamide. The latter compound is then phosphorylated through an ATP-dependent cobinamide kinase resulting in the release of ADP, a hydrogen ion and adenosyl-cobinamide phosphate. This last compound then interacts with GTP and a hydrogen ion through a cobinamide-P guanylyltransferase resulting in the release of a pyrophosphate and an adenosylcobinamide-GDP.

A dimethylbenzimidazole interacts with a nicotinate D-ribonucleotide through a nicotinate-nucleotide dimethylbenzumidazole phosphoribosyltransferase resulting in the release of a nicotinate, a hydrogen ion and an alpha-ribazole 5' phosphate.

The adenosylcobinamide-GDP and the alpha-ribazole 5' phosphate interact together through a cobalamin 5' phosphate synthase resulting in the release of a hydrogen ion, a GMP and Adenosylcobalamin 5'-phosphate. The latter compound then interacts with a water molecule through an adenosylcbalamin 5' phosphate phosphatase resulting in the release of a phosphate and a coenzyme B12.

Likewise a cobalamin molecule can interact with ATP through a cobalamin adenosyltransferase resulting in the release of a triphosphate and a coenzyme B12</description>
      <pathwhiz_id>PW001884</pathwhiz_id>
      <kegg_map_id/>
      <subject>Metabolic</subject>
    </pathway>
  </pathways>
  <spectra>
    <spectrum>
      <type>Specdb::EiMs</type>
      <spectrum_id>2062</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>286035</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>286036</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>286037</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>286038</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>286039</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>286040</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>286041</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>286042</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>286043</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>286044</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>286045</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>286046</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>286047</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>286048</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>286049</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>286050</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>286051</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>286052</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>286053</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>286054</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>296539</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>296540</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>296541</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>337867</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>337868</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>337869</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2694435</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2694436</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2694437</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2987312</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2987313</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2987314</spectrum_id>
    </spectrum>
  </spectra>
  <hmdb_id>HMDB00607</hmdb_id>
  <pubchem_compound_id>5462245</pubchem_compound_id>
  <chemspider_id/>
  <kegg_id>C02823</kegg_id>
  <chebi_id>28911</chebi_id>
  <biocyc_id>CPD-315</biocyc_id>
  <het_id/>
  <wikipidia>Cyanocobalamin</wikipidia>
  <foodb_id/>
  <general_references>
  </general_references>
  <synthesis_reference/>
  <msds_url>http://hmdb.ca/system/metabolites/msds/000/000/526/original/HMDB00607.pdf?1358893996</msds_url>
  <enzymes>
    <enzyme>
      <name>Vitamin B12 import ATP-binding protein BtuD</name>
      <uniprot_id>P06611</uniprot_id>
      <uniprot_name>BTUD_ECOLI</uniprot_name>
      <gene_name>btuD</gene_name>
      <protein_url>http://ecmdb.ca/proteins/P06611.xml</protein_url>
    </enzyme>
    <enzyme>
      <name>Vitamin B12 import system permease protein BtuC</name>
      <uniprot_id>P06609</uniprot_id>
      <uniprot_name>BTUC_ECOLI</uniprot_name>
      <gene_name>btuC</gene_name>
      <protein_url>http://ecmdb.ca/proteins/P06609.xml</protein_url>
    </enzyme>
    <enzyme>
      <name>Vitamin B12-binding protein</name>
      <uniprot_id>P37028</uniprot_id>
      <uniprot_name>BTUF_ECOLI</uniprot_name>
      <gene_name>btuF</gene_name>
      <protein_url>http://ecmdb.ca/proteins/P37028.xml</protein_url>
    </enzyme>
  </enzymes>
  <transporters>
    <enzyme>
      <name>Vitamin B12 import ATP-binding protein BtuD</name>
      <uniprot_id>P06611</uniprot_id>
      <uniprot_name>BTUD_ECOLI</uniprot_name>
      <gene_name>btuD</gene_name>
      <protein_url>http://ecmdb.ca/proteins/P06611.xml</protein_url>
    </enzyme>
    <enzyme>
      <name>Vitamin B12 import system permease protein BtuC</name>
      <uniprot_id>B1XG18</uniprot_id>
      <uniprot_name>BTUC_ECODH</uniprot_name>
      <gene_name>btuC</gene_name>
      <protein_url>http://ecmdb.ca/proteins/B1XG18.xml</protein_url>
    </enzyme>
    <enzyme>
      <name>Vitamin B12 import system permease protein BtuC</name>
      <uniprot_id>C4ZYH3</uniprot_id>
      <uniprot_name>BTUC_ECOBW</uniprot_name>
      <gene_name>btuC</gene_name>
      <protein_url>http://ecmdb.ca/proteins/C4ZYH3.xml</protein_url>
    </enzyme>
    <enzyme>
      <name>Vitamin B12 transporter BtuB</name>
      <uniprot_id>P06129</uniprot_id>
      <uniprot_name>BTUB_ECOLI</uniprot_name>
      <gene_name>btuB</gene_name>
      <protein_url>http://ecmdb.ca/proteins/P06129.xml</protein_url>
    </enzyme>
    <enzyme>
      <name>Vitamin B12 import system permease protein BtuC</name>
      <uniprot_id>P06609</uniprot_id>
      <uniprot_name>BTUC_ECOLI</uniprot_name>
      <gene_name>btuC</gene_name>
      <protein_url>http://ecmdb.ca/proteins/P06609.xml</protein_url>
    </enzyme>
    <enzyme>
      <name>Vitamin B12-binding protein</name>
      <uniprot_id>P37028</uniprot_id>
      <uniprot_name>BTUF_ECOLI</uniprot_name>
      <gene_name>btuF</gene_name>
      <protein_url>http://ecmdb.ca/proteins/P37028.xml</protein_url>
    </enzyme>
  </transporters>
  <reactions>
    <reaction_text>Cyanocobalamin + Adenosine triphosphate + Water + Cyanocobalamin &gt; Adenosine diphosphate + Phosphate + Hydrogen ion + Cyanocobalamin + ADP</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id/>
    <pw_reaction_id>PW_RCT000170</pw_reaction_id>
  </reactions>
  <concentrations>
  </concentrations>
</compound>
