2.0 2012-07-30 14:54:46 -0600 2015-06-03 17:20:48 -0600 ECMDB21175 M2MDB001584 5'-Deoxyribose 5'-deoxyribose is a deoxy pentose meaning that it is derived from the sugar ribose by loss of an oxygen atom in the 5' position. The more common form of deoxyribose used in DNA is 2'deoxyribose. 5'-deoxyribose can be formed by the breakdown of 5'deoxyadenosine as catalyzed by 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. (2R,3R,4R)-2,3,4-trihydroxypentanal (2R,3R,4R)-2,3,4-trihydroxyvaleraldehyde 5'-Deoxyribose 5-Deoxy-aldehydo-D-ribose 5-Deoxy-D-ribose 5-Desoxy-D-ribose D-Ribo-2,3,4-trihydroxyvaleraldehyde C5H10O4 134.1305 134.057908808 (2R,3R,4R)-2,3,4-trihydroxypentanal 5'-deoxyribose [H]O[C@@]([H])(C([H])=O)[C@]([H])(O[H])[C@]([H])(O[H])C([H])([H])[H] InChI=1S/C5H10O4/c1-3(7)5(9)4(8)2-6/h2-5,7-9H,1H3/t3-,4+,5-/m1/s1 WDRISBUVHBMJEF-MROZADKFSA-N Cytosol logp -1.74 ALOGPS logs 0.55 ALOGPS solubility 4.75e+02 g/l ALOGPS logp -1.9 ChemAxon pka_strongest_acidic 12.1 ChemAxon pka_strongest_basic -3.1 ChemAxon iupac (2R,3R,4R)-2,3,4-trihydroxypentanal ChemAxon average_mass 134.1305 ChemAxon mono_mass 134.057908808 ChemAxon smiles [H]O[C@@]([H])(C([H])=O)[C@]([H])(O[H])[C@]([H])(O[H])C([H])([H])[H] ChemAxon formula C5H10O4 ChemAxon inchi InChI=1S/C5H10O4/c1-3(7)5(9)4(8)2-6/h2-5,7-9H,1H3/t3-,4+,5-/m1/s1 ChemAxon inchikey WDRISBUVHBMJEF-MROZADKFSA-N ChemAxon polar_surface_area 77.76 ChemAxon refractivity 29.84 ChemAxon polarizability 12.53 ChemAxon rotatable_bond_count 3 ChemAxon acceptor_count 4 ChemAxon donor_count 3 ChemAxon physiological_charge 0 ChemAxon formal_charge 0 ChemAxon Specdb::CMs 1085145 Specdb::NmrOneD 313401 Specdb::NmrOneD 313402 Specdb::NmrOneD 313403 Specdb::NmrOneD 313404 Specdb::NmrOneD 313405 Specdb::NmrOneD 313406 Specdb::NmrOneD 313407 Specdb::NmrOneD 313408 Specdb::NmrOneD 313409 Specdb::NmrOneD 313410 Specdb::NmrOneD 313411 Specdb::NmrOneD 313412 Specdb::NmrOneD 313413 Specdb::NmrOneD 313414 Specdb::NmrOneD 313415 Specdb::NmrOneD 313416 Specdb::NmrOneD 313417 Specdb::NmrOneD 313418 Specdb::NmrOneD 313419 Specdb::NmrOneD 313420 Specdb::MsMs 26201 Specdb::MsMs 26202 Specdb::MsMs 26203 Specdb::MsMs 32759 Specdb::MsMs 32760 Specdb::MsMs 32761 45489773 23346160 62012 CPD0-2167 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase P0AF12 MTNN_ECOLI mtnN http://ecmdb.ca/proteins/P0AF12.xml Sugar efflux transporter C P31436 SETC_ECOLI setC http://ecmdb.ca/proteins/P31436.xml 5'-Deoxyadenosine + Water > 5'-Deoxyribose + Adenine RXN0-6550