<?xml version="1.0" encoding="UTF-8"?>
<compound>
  <version>2.0</version>
  <creation_date>2012-05-31 14:06:42 -0600</creation_date>
  <update_date>2015-09-13 12:56:14 -0600</update_date>
  <accession>ECMDB04151</accession>
  <m2m_id>M2MDB000640</m2m_id>
  <name>Salicin</name>
  <description>Salicin is an alcoholic beta-glucoside.  Salicin is closely related in chemical make-up to aspirin. Salicin can be used as a sugar substrate by E. coli and can be imported into the cytoplasm as salicin-6-phosphate through the ascF gene product.</description>
  <synonyms>
    <synonym>2-(hydroxymethyl)-phenyl-&amp;beta;-D-glucopyranoside</synonym>
    <synonym>2-(Hydroxymethyl)-phenyl-b-D-glucopyranoside</synonym>
    <synonym>2-(Hydroxymethyl)-phenyl-beta-D-glucopyranoside</synonym>
    <synonym>2-(Hydroxymethyl)-phenyl-β-D-glucopyranoside</synonym>
    <synonym>2-(Hydroxymethyl)phenyl hexopyranoside</synonym>
    <synonym>D(-)-Salicin</synonym>
    <synonym>D-Salicin</synonym>
    <synonym>Delta-Salicin</synonym>
    <synonym>Salicin</synonym>
    <synonym>Salicine</synonym>
    <synonym>Salicoside</synonym>
    <synonym>Salicyl alcohol glucoside</synonym>
    <synonym>Saligenin b-D-glucopyranoside</synonym>
    <synonym>Saligenin b-delta-glucopyranoside</synonym>
    <synonym>Saligenin b-δ-glucopyranoside</synonym>
    <synonym>Saligenin beta-D-glucopyranoside</synonym>
    <synonym>Saligenin beta-delta-glucopyranoside</synonym>
    <synonym>Saligenin β-D-glucopyranoside</synonym>
    <synonym>Saligenin β-δ-glucopyranoside</synonym>
    <synonym>Saligenin-b-D-glucopyranoside</synonym>
    <synonym>Saligenin-b-delta-glucopyranoside</synonym>
    <synonym>Saligenin-b-δ-glucopyranoside</synonym>
    <synonym>Saligenin-beta-D-glucopyranoside</synonym>
    <synonym>Saligenin-beta-delta-glucopyranoside</synonym>
    <synonym>Saligenin-β-D-glucopyranoside</synonym>
    <synonym>Saligenin-β-δ-glucopyranoside</synonym>
    <synonym>δ-Salicin</synonym>
  </synonyms>
  <chemical_formula>C13H18O7</chemical_formula>
  <average_molecular_weight>286.2778</average_molecular_weight>
  <monisotopic_moleculate_weight>286.10525293</monisotopic_moleculate_weight>
  <iupac_name>(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-[2-(hydroxymethyl)phenoxy]oxane-3,4,5-triol</iupac_name>
  <traditional_iupac>salicin</traditional_iupac>
  <cas_registry_number>138-52-3</cas_registry_number>
  <smiles>OC[C@H]1O[C@@H](OC2=C(CO)C=CC=C2)[C@H](O)[C@@H](O)[C@@H]1O</smiles>
  <inchi>InChI=1S/C13H18O7/c14-5-7-3-1-2-4-8(7)19-13-12(18)11(17)10(16)9(6-15)20-13/h1-4,9-18H,5-6H2/t9-,10-,11+,12-,13-/m1/s1</inchi>
  <inchikey>NGFMICBWJRZIBI-UJPOAAIJSA-N</inchikey>
  <state>Solid</state>
  <cellular_locations>
    <cellular_location>Cytoplasm</cellular_location>
    <cellular_location>Periplasm</cellular_location>
  </cellular_locations>
  <predicted_properties>
    <property>
      <kind>logp</kind>
      <value>-1.15</value>
      <source>ALOGPS</source>
    </property>
    <property>
      <kind>logs</kind>
      <value>-1.06</value>
      <source>ALOGPS</source>
    </property>
    <property>
      <kind>solubility</kind>
      <value>2.49e+01 g/l</value>
      <source>ALOGPS</source>
    </property>
  </predicted_properties>
  <experimental_properties>
    <property>
      <kind>melting_point</kind>
      <value>207 oC</value>
    </property>
  </experimental_properties>
  <property>
    <kind>logp</kind>
    <value>-1.4</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>pka_strongest_acidic</kind>
    <value>12.2</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>pka_strongest_basic</kind>
    <value>-2.9</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>iupac</kind>
    <value>(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-[2-(hydroxymethyl)phenoxy]oxane-3,4,5-triol</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>average_mass</kind>
    <value>286.2778</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>mono_mass</kind>
    <value>286.10525293</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>smiles</kind>
    <value>OC[C@H]1O[C@@H](OC2=C(CO)C=CC=C2)[C@H](O)[C@@H](O)[C@@H]1O</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>formula</kind>
    <value>C13H18O7</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>inchi</kind>
    <value>InChI=1S/C13H18O7/c14-5-7-3-1-2-4-8(7)19-13-12(18)11(17)10(16)9(6-15)20-13/h1-4,9-18H,5-6H2/t9-,10-,11+,12-,13-/m1/s1</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>inchikey</kind>
    <value>NGFMICBWJRZIBI-UJPOAAIJSA-N</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>polar_surface_area</kind>
    <value>119.61</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>refractivity</kind>
    <value>67</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>polarizability</kind>
    <value>27.89</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>rotatable_bond_count</kind>
    <value>4</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>acceptor_count</kind>
    <value>7</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>donor_count</kind>
    <value>5</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>physiological_charge</kind>
    <value>0</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>formal_charge</kind>
    <value>0</value>
    <source>ChemAxon</source>
  </property>
  <pathways>
    <pathway>
      <name>Glycolysis / Gluconeogenesis</name>
      <description/>
      <pathwhiz_id/>
      <kegg_map_id>ec00010</kegg_map_id>
      <subject/>
    </pathway>
    <pathway>
      <name>Phosphotransferase system (PTS)</name>
      <description/>
      <pathwhiz_id/>
      <kegg_map_id>ec02060</kegg_map_id>
      <subject/>
    </pathway>
  </pathways>
  <spectra>
    <spectrum>
      <type>Specdb::CMs</type>
      <spectrum_id>851</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::CMs</type>
      <spectrum_id>16254</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::CMs</type>
      <spectrum_id>30686</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::CMs</type>
      <spectrum_id>38626</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::CMs</type>
      <spectrum_id>168419</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>1976</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>28222</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>28223</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>28224</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>28225</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>28226</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>28227</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>28228</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>28229</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>28230</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>28231</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>28232</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>28233</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>28234</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>28235</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>28236</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>28237</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>28238</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>28239</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>28240</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>28241</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2325</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2326</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2327</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>301981</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>301982</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>301983</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>344599</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>344600</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>344601</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>449970</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>449971</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>449972</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>449973</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>449974</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>449975</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2226650</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2228054</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2229014</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2230450</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2231452</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2232731</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2233883</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2235073</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2470833</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2470834</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrTwoD</type>
      <spectrum_id>1911</spectrum_id>
    </spectrum>
  </spectra>
  <hmdb_id>HMDB03546</hmdb_id>
  <pubchem_compound_id>439503</pubchem_compound_id>
  <chemspider_id>388601</chemspider_id>
  <kegg_id>C01451</kegg_id>
  <chebi_id>17814</chebi_id>
  <biocyc_id>CPD-1142</biocyc_id>
  <het_id>SA0</het_id>
  <wikipidia>Salicin</wikipidia>
  <foodb_id/>
  <general_references>
    <reference>
      <reference_text>Keseler, I. M., Collado-Vides, J., Santos-Zavaleta, A., Peralta-Gil, M., Gama-Castro, S., Muniz-Rascado, L., Bonavides-Martinez, C., Paley, S., Krummenacker, M., Altman, T., Kaipa, P., Spaulding, A., Pacheco, J., Latendresse, M., Fulcher, C., Sarker, M., Shearer, A. G., Mackie, A., Paulsen, I., Gunsalus, R. P., Karp, P. D. (2011). "EcoCyc: a comprehensive database of Escherichia coli biology." Nucleic Acids Res 39:D583-D590.</reference_text>
      <pubmed_id>21097882</pubmed_id>
    </reference>
    <reference>
      <reference_text>Kanehisa, M., Goto, S., Sato, Y., Furumichi, M., Tanabe, M. (2012). "KEGG for integration and interpretation of large-scale molecular data sets." Nucleic Acids Res 40:D109-D114.</reference_text>
      <pubmed_id>22080510</pubmed_id>
    </reference>
    <reference>
      <reference_text>van der Werf, M. J., Overkamp, K. M., Muilwijk, B., Coulier, L., Hankemeier, T. (2007). "Microbial metabolomics: toward a platform with full metabolome coverage." Anal Biochem 370:17-25.</reference_text>
      <pubmed_id>17765195</pubmed_id>
    </reference>
    <reference>
      <reference_text>Winder, C. L., Dunn, W. B., Schuler, S., Broadhurst, D., Jarvis, R., Stephens, G. M., Goodacre, R. (2008). "Global metabolic profiling of Escherichia coli cultures: an evaluation of methods for quenching and extraction of intracellular metabolites." Anal Chem 80:2939-2948.</reference_text>
      <pubmed_id>18331064</pubmed_id>
    </reference>
    <reference>
      <reference_text>Sakurai M, Ohsako M, Nagano M, Nakamura C, Tsuzuki O, Ichikawa M, Matsumoto Y: [Effect of human serum albumin on transport of drugs through human erythrocyte membranes] Yakugaku Zasshi. 1996 Aug;116(8):630-8.</reference_text>
      <pubmed_id>8831264</pubmed_id>
    </reference>
    <reference>
      <reference_text>Mahdi JG, Mahdi AJ, Mahdi AJ, Bowen ID: The historical analysis of aspirin discovery, its relation to the willow tree and antiproliferative and anticancer potential. Cell Prolif. 2006 Apr;39(2):147-55.</reference_text>
      <pubmed_id>16542349</pubmed_id>
    </reference>
    <reference>
      <reference_text>Sadatsune T, Moreno G: [Contribution to the study of the haemolytic streptococci isolated from dogs (author's transl)] Arq Inst Biol (Sao Paulo). 1975;42:257-64.</reference_text>
      <pubmed_id>1236057</pubmed_id>
    </reference>
    <reference>
      <reference_text>Brenner DJ, Hickman-Brenner FW, Holmes B, Hawkey PM, Penner JL, Grimont PA, O'Hara CM: Replacement of NCTC 4175, the current type strain of Proteus vulgaris, with ATCC 29905. Request for an opinion. Int J Syst Bacteriol. 1995 Oct;45(4):870-1.</reference_text>
      <pubmed_id>7547312</pubmed_id>
    </reference>
  </general_references>
  <synthesis_reference>Julkunen-Tiitto, Riitta; Meier, Beat. The enzymic decomposition of salicin and its derivatives obtained from Salicaceae species. Journal of Natural Products (1992), 55(9), 1204-12.</synthesis_reference>
  <msds_url>http://hmdb.ca/system/metabolites/msds/000/003/127/original/HMDB03546.pdf?1358895578</msds_url>
  <enzymes>
    <enzyme>
      <name>PTS system beta-glucoside-specific EIIBCA component</name>
      <uniprot_id>P08722</uniprot_id>
      <uniprot_name>PTV3B_ECOLI</uniprot_name>
      <gene_name>bglF</gene_name>
      <protein_url>http://ecmdb.ca/proteins/P08722.xml</protein_url>
    </enzyme>
    <enzyme>
      <name>PTS system arbutin-, cellobiose-, and salicin-specific EIIBC component</name>
      <uniprot_id>P24241</uniprot_id>
      <uniprot_name>PTIBC_ECOLI</uniprot_name>
      <gene_name>ascF</gene_name>
      <protein_url>http://ecmdb.ca/proteins/P24241.xml</protein_url>
    </enzyme>
    <enzyme>
      <name>Glucose-specific phosphotransferase enzyme IIA component</name>
      <uniprot_id>P69783</uniprot_id>
      <uniprot_name>PTGA_ECOLI</uniprot_name>
      <gene_name>crr</gene_name>
      <protein_url>http://ecmdb.ca/proteins/P69783.xml</protein_url>
    </enzyme>
  </enzymes>
  <transporters>
    <enzyme>
      <name>PTS system beta-glucoside-specific EIIBCA component</name>
      <uniprot_id>P08722</uniprot_id>
      <uniprot_name>PTV3B_ECOLI</uniprot_name>
      <gene_name>bglF</gene_name>
      <protein_url>http://ecmdb.ca/proteins/P08722.xml</protein_url>
    </enzyme>
    <enzyme>
      <name>PTS system arbutin-, cellobiose-, and salicin-specific EIIBC component</name>
      <uniprot_id>P24241</uniprot_id>
      <uniprot_name>PTIBC_ECOLI</uniprot_name>
      <gene_name>ascF</gene_name>
      <protein_url>http://ecmdb.ca/proteins/P24241.xml</protein_url>
    </enzyme>
  </transporters>
  <reactions>
    <reaction_text>Protein N(pi)-phospho-L-histidine + Salicin &lt;&gt; Protein histidine + Salicin 6-phosphate</reaction_text>
    <kegg_reaction_id>R04394</kegg_reaction_id>
    <ecocyc_id/>
    <pw_reaction_id/>
    <reaction_text>Phosphoenolpyruvic acid + Salicin &gt; Salicin 6-phosphate + Pyruvic acid</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id>TRANS-RXN-153A</ecocyc_id>
    <pw_reaction_id/>
  </reactions>
  <concentrations>
  </concentrations>
</compound>
