<?xml version="1.0" encoding="UTF-8"?>
<compound>
  <version>2.0</version>
  <creation_date>2012-05-31 14:06:32 -0600</creation_date>
  <update_date>2015-10-02 02:25:46 -0600</update_date>
  <accession>ECMDB04147</accession>
  <m2m_id>M2MDB000637</m2m_id>
  <name>Ribose-1-phosphate</name>
  <description>Ribose 1-phosphate is an intermediate in the metabolism of Pyrimidine and the metabolism of Nicotinate and nicotinamide. It is a substrate for Uridine phosphorylase 2, Phosphoglucomutase, Purine nucleoside phosphorylase and Uridine phosphorylase 1.  Ribose 1-phosphate can be formed from guanosine through the action of purine nucleoside phosphorylase. Ribose 1-phosphate can also act as a ribose donor in the synthesis of xanthosine as catalyzed by the same enzyme (purine nucleoside phosphorylase). The presence of guanase, which irreversibly converts guanine to xanthine, affects the overall process of guanosine transformation. The activated ribose moiety in Ribose 1-phosphate which stems from the catabolism of purine nucleosides can be transferred to uracil and, in the presence of ATP, used for the synthesis of pyrimidine nucleotides; therefore, purine nucleosides can act as ribose donors for the salvage of pyrimidine bases. (PMID: 9133638)</description>
  <synonyms>
    <synonym>&amp;alpha;-D-ribofuranose 1-phosphate</synonym>
    <synonym>&amp;alpha;-D-ribofuranose 1-phosphoric acid</synonym>
    <synonym>&amp;alpha;-D-ribose-1P</synonym>
    <synonym>1-O-Phosphono-D-ribofuranose</synonym>
    <synonym>A-D-Ribofuranose 1-(dihydrogen phosphate)</synonym>
    <synonym>a-D-Ribofuranose 1-(dihydrogen phosphoric acid)</synonym>
    <synonym>a-D-Ribofuranose 1-phosphate</synonym>
    <synonym>a-D-Ribofuranose 1-phosphoric acid</synonym>
    <synonym>A-D-Ribose 1-phosphate</synonym>
    <synonym>a-D-Ribose 1-phosphoric acid</synonym>
    <synonym>a-D-Ribose-1P</synonym>
    <synonym>Alpha-D-Ribofuranose 1-(dihydrogen phosphate)</synonym>
    <synonym>alpha-D-Ribofuranose 1-(dihydrogen phosphoric acid)</synonym>
    <synonym>Alpha-D-Ribofuranose 1-phosphate</synonym>
    <synonym>alpha-D-Ribofuranose 1-phosphoric acid</synonym>
    <synonym>Alpha-D-Ribose 1-phosphate</synonym>
    <synonym>alpha-D-Ribose 1-phosphoric acid</synonym>
    <synonym>Alpha-D-Ribose-1P</synonym>
    <synonym>D-Ribofuranose 1-(dihydrogen phosphate)</synonym>
    <synonym>D-Ribofuranose 1-(dihydrogen phosphoric acid)</synonym>
    <synonym>D-Ribofuranose 1-phosphate</synonym>
    <synonym>D-Ribofuranose 1-phosphoric acid</synonym>
    <synonym>D-Ribose-1-phosphate</synonym>
    <synonym>D-Ribose-1-phosphoric acid</synonym>
    <synonym>D-Ribose-1P</synonym>
    <synonym>Ribofuranose 1-phosphate</synonym>
    <synonym>Ribofuranose 1-phosphoric acid</synonym>
    <synonym>Ribose 1-phosphate</synonym>
    <synonym>Ribose 1-phosphoric acid</synonym>
    <synonym>Ribose-1-phosphate</synonym>
    <synonym>Ribose-1-phosphoric acid</synonym>
    <synonym>α-D-Ribofuranose 1-(dihydrogen phosphate)</synonym>
    <synonym>α-D-Ribofuranose 1-(dihydrogen phosphoric acid)</synonym>
    <synonym>α-D-Ribofuranose 1-phosphate</synonym>
    <synonym>α-D-Ribofuranose 1-phosphoric acid</synonym>
    <synonym>α-D-Ribose 1-phosphate</synonym>
    <synonym>α-D-Ribose 1-phosphoric acid</synonym>
    <synonym>α-D-Ribose-1P</synonym>
  </synonyms>
  <chemical_formula>C5H11O8P</chemical_formula>
  <average_molecular_weight>230.1098</average_molecular_weight>
  <monisotopic_moleculate_weight>230.01915384</monisotopic_moleculate_weight>
  <iupac_name>{[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy}phosphonic acid</iupac_name>
  <traditional_iupac>ribose 1-phosphate</traditional_iupac>
  <cas_registry_number>14075-00-4</cas_registry_number>
  <smiles>OC[C@H]1O[C@H](OP(O)(O)=O)[C@H](O)[C@@H]1O</smiles>
  <inchi>InChI=1S/C5H11O8P/c6-1-2-3(7)4(8)5(12-2)13-14(9,10)11/h2-8H,1H2,(H2,9,10,11)/t2-,3-,4-,5-/m1/s1</inchi>
  <inchikey>YXJDFQJKERBOBM-TXICZTDVSA-N</inchikey>
  <state>Solid</state>
  <cellular_locations>
    <cellular_location>Cytosol</cellular_location>
  </cellular_locations>
  <predicted_properties>
    <property>
      <kind>logp</kind>
      <value>-2.04</value>
      <source>ALOGPS</source>
    </property>
    <property>
      <kind>logs</kind>
      <value>-0.82</value>
      <source>ALOGPS</source>
    </property>
    <property>
      <kind>solubility</kind>
      <value>3.52e+01 g/l</value>
      <source>ALOGPS</source>
    </property>
  </predicted_properties>
  <experimental_properties>
  </experimental_properties>
  <property>
    <kind>logp</kind>
    <value>-2.4</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>pka_strongest_acidic</kind>
    <value>1.16</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>pka_strongest_basic</kind>
    <value>-3</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>iupac</kind>
    <value>{[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy}phosphonic acid</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>average_mass</kind>
    <value>230.1098</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>mono_mass</kind>
    <value>230.01915384</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>smiles</kind>
    <value>OC[C@H]1O[C@H](OP(O)(O)=O)[C@H](O)[C@@H]1O</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>formula</kind>
    <value>C5H11O8P</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>inchi</kind>
    <value>InChI=1S/C5H11O8P/c6-1-2-3(7)4(8)5(12-2)13-14(9,10)11/h2-8H,1H2,(H2,9,10,11)/t2-,3-,4-,5-/m1/s1</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>inchikey</kind>
    <value>YXJDFQJKERBOBM-TXICZTDVSA-N</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>polar_surface_area</kind>
    <value>136.68</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>refractivity</kind>
    <value>40.83</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>polarizability</kind>
    <value>18.17</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>rotatable_bond_count</kind>
    <value>3</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>acceptor_count</kind>
    <value>7</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>donor_count</kind>
    <value>5</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>physiological_charge</kind>
    <value>-2</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>formal_charge</kind>
    <value>0</value>
    <source>ChemAxon</source>
  </property>
  <pathways>
    <pathway>
      <name>Pentose phosphate pathway</name>
      <description/>
      <pathwhiz_id/>
      <kegg_map_id>ec00030</kegg_map_id>
      <subject/>
    </pathway>
    <pathway>
      <name>Purine metabolism</name>
      <description/>
      <pathwhiz_id/>
      <kegg_map_id>ec00230</kegg_map_id>
      <subject/>
    </pathway>
    <pathway>
      <name>Pyrimidine metabolism</name>
      <description>The metabolism of pyrimidines begins with L-glutamine interacting with water molecule and a hydrogen carbonate through an ATP driven carbamoyl phosphate synthetase resulting in a hydrogen ion, an ADP, a phosphate, an L-glutamic acid and a carbamoyl phosphate. The latter compound interacts with an L-aspartic acid through a aspartate transcarbamylase resulting in a phosphate, a hydrogen ion and a N-carbamoyl-L-aspartate. The latter compound interacts with a hydrogen ion through a dihydroorotase resulting in the release of a water molecule and a 4,5-dihydroorotic acid. This compound interacts with an ubiquinone-1 through a dihydroorotate dehydrogenase, type 2 resulting in a release of an ubiquinol-1 and an orotic acid. The orotic acid then interacts with a phosphoribosyl pyrophosphate through a orotate phosphoribosyltransferase resulting in a pyrophosphate and an orotidylic acid. The latter compound then interacts with a hydrogen ion through an orotidine-5 '-phosphate decarboxylase, resulting in an release of carbon dioxide and an Uridine 5' monophosphate. The Uridine 5' monophosphate process to get phosphorylated by an ATP driven UMP kinase resulting in the release of an ADP and an Uridine 5--diphosphate.
Uridine 5-diphosphate can be metabolized in multiple ways in order to produce a Deoxyuridine triphosphate.
        1.-Uridine 5-diphosphate interacts with a reduced thioredoxin through a ribonucleoside diphosphate reductase 1 resulting in the release of a water molecule and an oxidized thioredoxin and an dUDP. The dUDP is then phosphorylated by an ATP through a nucleoside diphosphate kinase resulting in the release of an ADP and a DeoxyUridine triphosphate.
        2.-Uridine 5-diphosphate interacts with a reduced NrdH glutaredoxin-like protein through a Ribonucleoside-diphosphate reductase 1 resulting in a release of a water molecule, an oxidized NrdH glutaredoxin-like protein and a dUDP. The dUDP is then phosphorylated by an ATP through a nucleoside diphosphate kinase resulting in the release of an ADP and a DeoxyUridine triphosphate.
        3.-Uridine 5-diphosphate is phosphorylated by an ATP-driven nucleoside diphosphate kinase resulting in an ADP and an Uridinetriphosphate. The latter compound interacts with a reduced flavodoxin through ribonucleoside-triphosphate reductase resulting in the release of an oxidized flavodoxin, a water molecule and a Deoxyuridine triphosphate
        4.-Uridine 5-diphosphate is phosphorylated by an ATP-driven nucleoside diphosphate kinase resulting in an ADP and an Uridinetriphosphate    The uridine triphosphate interacts with a L-glutamine and a water molecule through an ATP driven CTP synthase resulting in an ADP, a phosphate, a hydrogen ion, an L-glutamic acid and a cytidine triphosphate. The cytidine triphosphate interacts with a reduced flavodoxin through a ribonucleoside-triphosphate reductase resulting in the release of a water molecule, an oxidized flavodoxin and a dCTP. The dCTP interacts with a water molecule and a hydrogen ion through a dCTP deaminase resulting in a release of an ammonium molecule and a Deoxyuridine triphosphate.
        5.-Uridine 5-diphosphate is phosphorylated by an ATP-driven nucleoside diphosphate kinase resulting in an ADP and an Uridinetriphosphate The uridine triphosphate interacts with a L-glutamine and a water molecule through an ATP driven CTP synthase resulting in an ADP, a phosphate, a hydrogen ion, an L-glutamic acid and a cytidine triphosphate. The cytidine triphosphate then interacts spontaneously with a water molecule resulting in the release of a phosphate, a hydrogen ion and a CDP. The CDP then interacts with a reduced NrdH glutaredoxin-like protein through a ribonucleoside-diphosphate reductase 2 resulting in the release of a water molecule, an oxidized NrdH glutaredoxin-like protein and a dCDP. The dCDP is then phosphorylated through an ATP driven nucleoside diphosphate kinase resulting in an ADP and a dCTP. The dCTP interacts with a water molecule and a hydrogen ion through a dCTP deaminase resulting in a release of an ammonium molecule and a Deoxyuridine triphosphate.
        6.-Uridine 5-diphosphate is phosphorylated by an ATP-driven nucleoside diphosphate kinase resulting in an ADP and an Uridinetriphosphate The uridine triphosphate interacts with a L-glutamine and a water molecule through an ATP driven CTP synthase resulting in an ADP, a phosphate, a hydrogen ion, an L-glutamic acid and a cytidine triphosphate. The cytidine triphosphate then interacts spontaneously with a water molecule resulting in the release of a phosphate, a hydrogen ion and a CDP. The CDP interacts with a reduced thioredoxin through a ribonucleoside diphosphate reductase 1 resulting in a release of a water molecule, an oxidized thioredoxin and a dCDP. The dCDP is then phosphorylated through an ATP driven nucleoside diphosphate kinase resulting in an ADP and a dCTP. The dCTP interacts with a water molecule and a hydrogen ion through a dCTP deaminase resulting in a release of an ammonium molecule and a Deoxyuridine triphosphate.

The deoxyuridine triphosphate then interacts with a water molecule through a nucleoside triphosphate pyrophosphohydrolase resulting in a release of a hydrogen ion, a phosphate and a dUMP. The dUMP then interacts with a methenyltetrahydrofolate through a thymidylate synthase resulting in a dihydrofolic acid and a 5-thymidylic acid. Then 5-thymidylic acid is then phosphorylated through a nucleoside diphosphate kinase resulting in the release of an ADP and thymidine 5'-triphosphate.</description>
      <pathwhiz_id>PW000942</pathwhiz_id>
      <kegg_map_id>ec00240</kegg_map_id>
      <subject>Metabolic</subject>
    </pathway>
    <pathway>
      <name>Drug metabolism - other enzymes</name>
      <description/>
      <pathwhiz_id/>
      <kegg_map_id>ec00983</kegg_map_id>
      <subject/>
    </pathway>
    <pathway>
      <name>Nicotinate and nicotinamide metabolism</name>
      <description/>
      <pathwhiz_id/>
      <kegg_map_id>ec00760</kegg_map_id>
      <subject/>
    </pathway>
    <pathway>
      <name>Metabolic pathways</name>
      <description/>
      <pathwhiz_id/>
      <kegg_map_id>eco01100</kegg_map_id>
      <subject/>
    </pathway>
    <pathway>
      <name>PRPP Biosynthesis</name>
      <description>The biosynthesis of phosphoribosyl pyrophosphate begins with a product of the pentose phosphate, D-ribose 5-phosphate interact with a  phosphopentomutase  resulting in a Ribose 1-phosphate or it can be phosphorylated through an ATP driven ribose-phosphate diphosphokinase resulting in a release of a hydrogen ion, an AMP and a phosphoribosyl pyrophosphate. The latter compound is then involved in the purine nucleotides de novo biosynthesis pathway.
Ribose 1-phosphate can interact spontaneously with ATP resulting in a release of hydrogen ion, ADP and a ribose 1,5-biphosphate. The latter compound is then phosphorylated through a ribose 1,5-bisphosphokinase resulting in the release of ADP and phosphoribosyl pyrophosphate. The latter compound is then involved in the purine nucleotides de novo biosynthesis pathway.</description>
      <pathwhiz_id>PW000909</pathwhiz_id>
      <kegg_map_id/>
      <subject>Metabolic</subject>
    </pathway>
    <pathway>
      <name>Pyrimidine ribonucleosides degradtion</name>
      <description>Cytidine and Uridine are transported through their corresponding nucleoside hydrogen symporters . Once cytidine is incorporated into the cytosol, it is deaminated through a reaction with water and a hydrogen ion through a cytidine deaminase resulting in the release of ammonium and uridine. 
Uridine is then lyase by a phosphate through a uridine phosphorylase resulting in the release of a uracil and a alpha-D-ribose-1-phosphate. This compound is then transformed into an isomer D-ribose 5-phosphate through a alpha-D-ribose 1,5-phosphomutase. This cumpound is then incorporated into the pentose phosphate pathway
</description>
      <pathwhiz_id>PW002024</pathwhiz_id>
      <kegg_map_id/>
      <subject>Metabolic</subject>
    </pathway>
    <pathway>
      <name>adenine and adenosine salvage I</name>
      <description>The salvage of adenine begins with adenine being transporter into the cytosol through a adeP hydrogen symporter. Once in the cytosol adenine is degraded by reacting with a ribose-1-phosphate through an adenosine phosphorylase resulting in the release of a phosphate and adenosine. Adenosine is then deaminated by reacting with water, a hydrogen ion and an adenosine deaminase resulting in the release of an ammonium and a inosine . Inosine then reacts with a phosphate through a inosine phosphorylase resulting in the release of a ribose 1-phosphate and a hypoxanthine. Hypoxanthine reacts with a PRPP through a hypoxanthine phosphoribosyltransferase resulting in the release of a pyrophosphate and a IMP molecule.</description>
      <pathwhiz_id>PW002069</pathwhiz_id>
      <kegg_map_id/>
      <subject>Metabolic</subject>
    </pathway>
    <pathway>
      <name>adenine and adenosine salvage II</name>
      <description>The salvage of adenine begins with adenine being transporter into the cytosol through a adeP hydrogen symporter. Once in the cytosol adenine is degraded by reacting with a ribose-1-phosphate through an adenosine phosphorylase resulting in the release of a phosphate and adenosine. Adenosine is then deaminated by reacting with water, a hydrogen ion and an adenosine deaminase resulting in the release of an ammonium and a inosine . Inosine can then be phosphorylated through an ATP driven inosine kinase resulting in the release of an ADP, a hydrogen ion and a IMP</description>
      <pathwhiz_id>PW002071</pathwhiz_id>
      <kegg_map_id/>
      <subject>Metabolic</subject>
    </pathway>
    <pathway>
      <name>guanine and guanosine salvage</name>
      <description>Guanosine can be converted into guanine through a phosphate driven guanosine phosphorylase resulting in the release of an alpha-D-ribose 1 phosphate and a guanine. This compound in turn reacts with a PRPP through a guanine phosphoribosyltransferase resulting in the release of a pyrophosphate and a GMP.
Guanosine can also react with and ATP driven guanosine kinase resulting in the release of an ADP, s hydrogen ion and a GMP
</description>
      <pathwhiz_id>PW002074</pathwhiz_id>
      <kegg_map_id/>
      <subject>Metabolic</subject>
    </pathway>
    <pathway>
      <name>purine ribonucleosides degradation</name>
      <description>Purine ribonucleoside degradation leads to the production of alpha-D-ribose-1-phosphate.
Xanthosine is transported into the cytosol through a xapB. Once in the cytosol xanthosine interacts with phosphate through a xanthosine phosphorylase resulting in the release of a xanthine and a alpha-D-ribose-1-phosphate.
Adenosine is transported through a nupC or a nupG transporter, once inside the cytosol it can either react with a phosphate through a adenosine phosphorylase resultin in the release of a adenine and an alpha-D-ribose-1-phosphate. Adenosine reacts with water and hydrogen ion through a adenosine deaminase resulting in the release of ammonium and inosine. Inosine reacts with phosphate through a inosine phosphorylase resulting in the release of a hypoxanthine and an alpha-D-ribose-1-phosphate.
Guanosine reacts with a phosphate through a guanosine phosphorylase resulting in the release of a guanine and a alpha-D-ribose-1-phosphate.</description>
      <pathwhiz_id>PW002076</pathwhiz_id>
      <kegg_map_id/>
      <subject>Metabolic</subject>
    </pathway>
    <pathway>
      <name>adenosine nucleotides degradation</name>
      <description>The degradation of of adenosine nucleotides starts with AMP reacting with water through a nucleoside monophosphate phosphatase results in the release of phosphate and a adenosine. Adenosine reacts with water and hydrogen ion through an adenosine deaminase resulting in the release of ammonium and a inosine. Inosine reacts with phosphate through a inosine phosphorylase resulting in the release of an alpha-D-ribose-1-phosphate and an hypoxanthine. Hypoxanthine reacts with a water molecule and a NAD molecule through an hypoxanthine hydroxylase resulting in the release of an hydrogen ion, an NADH and a xanthine. Xanthine in turn is degraded by reacting with a water molecule and a NAD through xanthine NAD oxidoreductase resulting in the release of NADH, a hydrogen ion and urate.</description>
      <pathwhiz_id>PW002091</pathwhiz_id>
      <kegg_map_id/>
      <subject>Metabolic</subject>
    </pathway>
    <pathway>
      <name>pyrimidine ribonucleosides degradation</name>
      <description>The degradation of pyrimidine ribonucleosides starts with either cytidine or uridine being transported into the cytosol.
Cytidine is transported into the cytosol through an nupG transporter. Once inside the cytosol, it can be degraded into uridine by reacting with water and ahydrogen ion through a cytidine deaminase resulting in the release of ammonium and uridine. 
Uridine is transported into the cytosol through a nupG. Once in the cytosol , uridine can be degrade by reacting with phosphate through a uridine phosphorylase resulting in the release of an alpha-D-ribose-1-phosphate and a uracil. The alpha-D-ribose-1-phosphate reacts with an alpha-d-ribose 1,5-phosphomutase resulting in the release of a D-ribose 5-phosphate which can be incorporated into the pentose phosphate pathway.</description>
      <pathwhiz_id>PW002104</pathwhiz_id>
      <kegg_map_id/>
      <subject>Metabolic</subject>
    </pathway>
    <pathway>
      <name>adenine and adenosine salvage III</name>
      <ecocyc_pathway_id>PWY-6609</ecocyc_pathway_id>
    </pathway>
    <pathway>
      <name>adenine and adenosine salvage V</name>
      <ecocyc_pathway_id>PWY-6611</ecocyc_pathway_id>
    </pathway>
    <pathway>
      <name>purine ribonucleosides degradation to ribose-1-phosphate</name>
      <ecocyc_pathway_id>PWY0-1296</ecocyc_pathway_id>
    </pathway>
    <pathway>
      <name>adenosine nucleotides degradation II</name>
      <ecocyc_pathway_id>SALVADEHYPOX-PWY</ecocyc_pathway_id>
    </pathway>
    <pathway>
      <name>salvage pathways of pyrimidine ribonucleotides</name>
      <ecocyc_pathway_id>PWY0-163</ecocyc_pathway_id>
    </pathway>
    <pathway>
      <name>pyrimidine ribonucleosides degradation I</name>
      <ecocyc_pathway_id>PWY0-1295</ecocyc_pathway_id>
    </pathway>
    <pathway>
      <name>guanosine nucleotides degradation III</name>
      <ecocyc_pathway_id>PWY-6608</ecocyc_pathway_id>
    </pathway>
    <pathway>
      <name>guanine and guanosine salvage I</name>
      <ecocyc_pathway_id>PWY-6620</ecocyc_pathway_id>
    </pathway>
    <pathway>
      <name>xanthine and xanthosine salvage</name>
      <ecocyc_pathway_id>SALVPURINE2-PWY</ecocyc_pathway_id>
    </pathway>
    <pathway>
      <name>PRPP biosynthesis II</name>
      <ecocyc_pathway_id>PWY0-661</ecocyc_pathway_id>
    </pathway>
  </pathways>
  <spectra>
    <spectrum>
      <type>Specdb::CMs</type>
      <spectrum_id>3434</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::CMs</type>
      <spectrum_id>38092</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::CMs</type>
      <spectrum_id>136392</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::CMs</type>
      <spectrum_id>144126</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>147880</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>147881</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>147882</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>147883</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>147884</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>147885</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>147886</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>147887</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>147888</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>147889</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>147890</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>147891</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>147892</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>147893</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>147894</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>147895</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>147896</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>147897</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>147898</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>147899</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>26912</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>26913</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>26914</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>33470</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>33471</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>33472</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>438394</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>438395</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>438396</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>438397</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>438398</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2802613</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2802614</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2802615</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2878880</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2878881</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2878882</spectrum_id>
    </spectrum>
  </spectra>
  <hmdb_id>HMDB01489</hmdb_id>
  <pubchem_compound_id>123732</pubchem_compound_id>
  <chemspider_id>388373</chemspider_id>
  <kegg_id>C00620</kegg_id>
  <chebi_id>16300</chebi_id>
  <biocyc_id>RIBOSE-1P</biocyc_id>
  <het_id>RDP</het_id>
  <wikipidia/>
  <foodb_id/>
  <general_references>
    <reference>
      <reference_text>Keseler, I. M., Collado-Vides, J., Santos-Zavaleta, A., Peralta-Gil, M., Gama-Castro, S., Muniz-Rascado, L., Bonavides-Martinez, C., Paley, S., Krummenacker, M., Altman, T., Kaipa, P., Spaulding, A., Pacheco, J., Latendresse, M., Fulcher, C., Sarker, M., Shearer, A. G., Mackie, A., Paulsen, I., Gunsalus, R. P., Karp, P. D. (2011). "EcoCyc: a comprehensive database of Escherichia coli biology." Nucleic Acids Res 39:D583-D590.</reference_text>
      <pubmed_id>21097882</pubmed_id>
    </reference>
    <reference>
      <reference_text>Kanehisa, M., Goto, S., Sato, Y., Furumichi, M., Tanabe, M. (2012). "KEGG for integration and interpretation of large-scale molecular data sets." Nucleic Acids Res 40:D109-D114.</reference_text>
      <pubmed_id>22080510</pubmed_id>
    </reference>
    <reference>
      <reference_text>van der Werf, M. J., Overkamp, K. M., Muilwijk, B., Coulier, L., Hankemeier, T. (2007). "Microbial metabolomics: toward a platform with full metabolome coverage." Anal Biochem 370:17-25.</reference_text>
      <pubmed_id>17765195</pubmed_id>
    </reference>
    <reference>
      <reference_text>Winder, C. L., Dunn, W. B., Schuler, S., Broadhurst, D., Jarvis, R., Stephens, G. M., Goodacre, R. (2008). "Global metabolic profiling of Escherichia coli cultures: an evaluation of methods for quenching and extraction of intracellular metabolites." Anal Chem 80:2939-2948.</reference_text>
      <pubmed_id>18331064</pubmed_id>
    </reference>
    <reference>
      <reference_text>Bennett, B. D., Kimball, E. H., Gao, M., Osterhout, R., Van Dien, S. J., Rabinowitz, J. D. (2009). "Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli." Nat Chem Biol 5:593-599.</reference_text>
      <pubmed_id>19561621</pubmed_id>
    </reference>
    <reference>
      <reference_text>Giorgelli, F., Bottai, C., Mascia, L., Scolozzi, C., Camici, M., Ipata, P. L. (1997). "Recycling of alpha-D-ribose 1-phosphate for nucleoside interconversion." Biochim Biophys Acta 1335:6-22.</reference_text>
      <pubmed_id>9133638</pubmed_id>
    </reference>
    <reference>
      <reference_text>Nakayama Y, Kinoshita A, Tomita M: Dynamic simulation of red blood cell metabolism and its application to the analysis of a pathological condition. Theor Biol Med Model. 2005 May 9;2(1):18.</reference_text>
      <pubmed_id>15882454</pubmed_id>
    </reference>
  </general_references>
  <synthesis_reference>Tochikura, Tatsurokuro; Sakai, Takuo; Ogata, Koichi.  Ribose 1-phosphate production by fermentation.    Jpn. Tokkyo Koho  (1969),     3 pp.</synthesis_reference>
  <msds_url/>
  <enzymes>
    <enzyme>
      <name>Phosphopentomutase</name>
      <uniprot_id>P0A6K6</uniprot_id>
      <uniprot_name>DEOB_ECOLI</uniprot_name>
      <gene_name>deoB</gene_name>
      <protein_url>http://ecmdb.ca/proteins/P0A6K6.xml</protein_url>
    </enzyme>
    <enzyme>
      <name>Purine nucleoside phosphorylase deoD-type</name>
      <uniprot_id>P0ABP8</uniprot_id>
      <uniprot_name>DEOD_ECOLI</uniprot_name>
      <gene_name>deoD</gene_name>
      <protein_url>http://ecmdb.ca/proteins/P0ABP8.xml</protein_url>
    </enzyme>
    <enzyme>
      <name>Uridine phosphorylase</name>
      <uniprot_id>P12758</uniprot_id>
      <uniprot_name>UDP_ECOLI</uniprot_name>
      <gene_name>udp</gene_name>
      <protein_url>http://ecmdb.ca/proteins/P12758.xml</protein_url>
    </enzyme>
    <enzyme>
      <name>Phosphoglucomutase</name>
      <uniprot_id>P36938</uniprot_id>
      <uniprot_name>PGM_ECOLI</uniprot_name>
      <gene_name>pgm</gene_name>
      <protein_url>http://ecmdb.ca/proteins/P36938.xml</protein_url>
    </enzyme>
    <enzyme>
      <name>Xanthosine phosphorylase</name>
      <uniprot_id>P45563</uniprot_id>
      <uniprot_name>XAPA_ECOLI</uniprot_name>
      <gene_name>xapA</gene_name>
      <protein_url>http://ecmdb.ca/proteins/P45563.xml</protein_url>
    </enzyme>
    <enzyme>
      <name>Uncharacterized protein yhfW</name>
      <uniprot_id>P45549</uniprot_id>
      <uniprot_name>YHFW_ECOLI</uniprot_name>
      <gene_name>yhfW</gene_name>
      <protein_url>http://ecmdb.ca/proteins/P45549.xml</protein_url>
    </enzyme>
  </enzymes>
  <transporters>
  </transporters>
  <reactions>
    <reaction_text>Guanosine + Phosphate &lt;&gt; Guanine + Ribose-1-phosphate</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id>RXN0-5199</ecocyc_id>
    <pw_reaction_id/>
    <reaction_text>Inosine + Phosphate &lt;&gt; Hypoxanthine + Ribose-1-phosphate</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id>INOPHOSPHOR-RXN</ecocyc_id>
    <pw_reaction_id/>
    <reaction_text>Ribose-1-phosphate &lt;&gt; D-Ribose-5-phosphate</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id>PPENTOMUT-RXN</ecocyc_id>
    <pw_reaction_id/>
    <reaction_text>Phosphate + Xanthosine &lt;&gt; Ribose-1-phosphate + Xanthine</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id>XANTHOSINEPHOSPHORY-RXN</ecocyc_id>
    <pw_reaction_id/>
    <reaction_text>Phosphate + Uridine &lt;&gt; Ribose-1-phosphate + Uracil</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id>URPHOS-RXN</ecocyc_id>
    <pw_reaction_id/>
    <reaction_text>Adenosine + Phosphate &lt;&gt; Adenine + Ribose-1-phosphate</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id>ADENPHOSPHOR-RXN</ecocyc_id>
    <pw_reaction_id/>
    <reaction_text>Ribose-1-phosphate + Adenosine triphosphate &gt; Hydrogen ion + Ribose 1,5-bisphosphate + ADP</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id>RXN0-1402</ecocyc_id>
    <pw_reaction_id/>
    <reaction_text>a purine ribonucleoside + Phosphate &lt;&gt; a purine base + Ribose-1-phosphate</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id>PNP-RXN</ecocyc_id>
    <pw_reaction_id/>
    <reaction_text>Xanthosine + Phosphate &gt; Ribose-1-phosphate + Xanthine</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id>XANTHOSINEPHOSPHORY-RXN</ecocyc_id>
    <pw_reaction_id/>
    <reaction_text>Ribose-1-phosphate &gt; D-Ribose-5-phosphate</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id/>
    <pw_reaction_id/>
    <reaction_text>Purine nucleoside + Inorganic phosphate &gt; Purine + Ribose-1-phosphate</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id/>
    <pw_reaction_id/>
    <reaction_text>Uridine + Inorganic phosphate &gt; Uracil + Ribose-1-phosphate</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id/>
    <pw_reaction_id/>
    <reaction_text>Uridine + Phosphate &lt;&gt; Uracil + alpha-D-Ribose 1-phosphate + Ribose-1-phosphate</reaction_text>
    <kegg_reaction_id>R01876</kegg_reaction_id>
    <ecocyc_id/>
    <pw_reaction_id/>
    <reaction_text>alpha-D-Ribose 1-phosphate + Ribose-1-phosphate &lt;&gt; D-Ribose-5-phosphate</reaction_text>
    <kegg_reaction_id>R01057</kegg_reaction_id>
    <ecocyc_id/>
    <pw_reaction_id/>
    <reaction_text>Purine nucleoside + Phosphate + Purine deoxyribonucleoside &lt;&gt; Purine + Ribose-1-phosphate + Deoxyribose 1-phosphate</reaction_text>
    <kegg_reaction_id>R08368 </kegg_reaction_id>
    <ecocyc_id/>
    <pw_reaction_id/>
    <reaction_text>D-Ribose-5-phosphate &gt; Ribose-1-phosphate</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id/>
    <pw_reaction_id>PW_R003407</pw_reaction_id>
    <reaction_text>Uridine + Phosphate &gt; Uracil + Ribose-1-phosphate</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id/>
    <pw_reaction_id>PW_R005898</pw_reaction_id>
    <reaction_text>Adenine + Ribose-1-phosphate &gt; Phosphate + Adenosine</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id/>
    <pw_reaction_id>PW_R006047</pw_reaction_id>
    <reaction_text>Inosine + Phosphate &gt; Ribose-1-phosphate + Hypoxanthine</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id/>
    <pw_reaction_id>PW_R006050</pw_reaction_id>
    <reaction_text>Guanosine + Phosphate &gt; Ribose-1-phosphate + Guanine</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id/>
    <pw_reaction_id>PW_R006058</pw_reaction_id>
    <reaction_text>Adenosine + Phosphate &gt; Adenine + Ribose-1-phosphate</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id/>
    <pw_reaction_id>PW_R006066</pw_reaction_id>
  </reactions>
  <concentrations>
    <growth_media>Gutnick minimal complete medium (4.7 g/L KH2PO4; 13.5 g/L K2HPO4; 1 g/L K2SO4; 0.1 g/L MgSO4-7H2O; 10 mM NH4Cl) with 4 g/L glycerol</growth_media>
    <growth_system>Shake flask and filter culture</growth_system>
    <concentration>1020.0</concentration>
    <concentration_units>uM</concentration_units>
    <internal/>
    <error>0.0</error>
    <temperature>37 oC</temperature>
    <strain>K12 NCM3722</strain>
    <growth_status>Mid-Log Phase</growth_status>
    <molecules>4080000</molecules>
    <molecules_error>0</molecules_error>
    <reference>
      <reference_text>Bennett, B. D., Kimball, E. H., Gao, M., Osterhout, R., Van Dien, S. J., Rabinowitz, J. D. (2009). "Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli." Nat Chem Biol 5:593-599.</reference_text>
      <pubmed_id>19561621</pubmed_id>
    </reference>
    <growth_media>Gutnick minimal complete medium (4.7 g/L KH2PO4; 13.5 g/L K2HPO4; 1 g/L K2SO4; 0.1 g/L MgSO4-7H2O; 10 mM NH4Cl) with 4 g/L acetate</growth_media>
    <growth_system>Shake flask and filter culture</growth_system>
    <concentration>686.0</concentration>
    <concentration_units>uM</concentration_units>
    <internal/>
    <error>0.0</error>
    <temperature>37 oC</temperature>
    <strain>K12 NCM3722</strain>
    <growth_status>Mid-Log Phase</growth_status>
    <molecules>2744000</molecules>
    <molecules_error>0</molecules_error>
    <reference>
      <reference_text>Bennett, B. D., Kimball, E. H., Gao, M., Osterhout, R., Van Dien, S. J., Rabinowitz, J. D. (2009). "Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli." Nat Chem Biol 5:593-599.</reference_text>
      <pubmed_id>19561621</pubmed_id>
    </reference>
    <growth_media>Gutnick minimal complete medium (4.7 g/L KH2PO4; 13.5 g/L K2HPO4; 1 g/L K2SO4; 0.1 g/L MgSO4-7H2O; 10 mM NH4Cl) with 4 g/L glucose</growth_media>
    <growth_system>Shake flask and filter culture</growth_system>
    <concentration>1320.0</concentration>
    <concentration_units>uM</concentration_units>
    <internal/>
    <error>0.0</error>
    <temperature>37 oC</temperature>
    <strain>K12 NCM3722</strain>
    <growth_status>Mid-Log Phase</growth_status>
    <molecules>5280000</molecules>
    <molecules_error>0</molecules_error>
    <reference>
      <reference_text>Bennett, B. D., Kimball, E. H., Gao, M., Osterhout, R., Van Dien, S. J., Rabinowitz, J. D. (2009). "Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli." Nat Chem Biol 5:593-599.</reference_text>
      <pubmed_id>19561621</pubmed_id>
    </reference>
  </concentrations>
</compound>
