2.02012-05-31 14:49:56 -06002015-06-03 17:20:11 -0600ECMDB20544M2MDB001351D-Ribulose-1-phosphateD-ribulose-1-phosphate is a pentose phosphate. Pentoses are monosaccharides in which the carbohydrate moiety contains five carbon atoms. D-RIBULOSE-1-PD-Ribulose-1-phosphoric acidC5H11O8P230.1098230.01915384[(3,4,5-trihydroxy-2-oxopentyl)oxy]phosphonic acid(3,4,5-trihydroxy-2-oxopentyl)oxyphosphonic acidOCC(O)C(O)C(=O)COP(O)(O)=OInChI=1S/C5H11O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h3,5-7,9H,1-2H2,(H2,10,11,12)NBOCCPQHBPGYCX-UHFFFAOYSA-NCytoplasmPeriplasmlogp-1.80logs-0.97solubility2.47e+01 g/llogp-2.8pka_strongest_acidic1.18pka_strongest_basic-3iupac[(3,4,5-trihydroxy-2-oxopentyl)oxy]phosphonic acidaverage_mass230.1098mono_mass230.01915384smilesOCC(O)C(O)C(=O)COP(O)(O)=OformulaC5H11O8PinchiInChI=1S/C5H11O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h3,5-7,9H,1-2H2,(H2,10,11,12)inchikeyNBOCCPQHBPGYCX-UHFFFAOYSA-Npolar_surface_area144.52refractivity42.47polarizability18.07rotatable_bond_count6acceptor_count7donor_count5physiological_charge-2formal_charge0D-arabinose degradation IE. coli K-12 uses the enzymes of the fucose degradation pathway for utilization of D-arabinose. Expression of the enzymes in this pathway is normally induced by L-fucose and not by D-arabinose; thus, wild-type E. coli K-12 can not use D-arabinose as a sole source of carbon and energy without prior induction by growth on L-fucose. Growth on D-arabinose requires a mutation in the transcriptional regulator FucR. D-arabinose is metabolized yielding dihydroxy-acetone phosphate, an intermediate of glycolysis, which thereby enters central metabolism, and glycolaldehyde. Glycolaldehyde may be further catabolized to glycolate. (EcoCyc)PW002038MetabolicD-arabinose degradation IDARABCATK12-PWYSpecdb::CMs112174Specdb::CMs125584Specdb::CMs1006488Specdb::CMs1006489Specdb::CMs1006490Specdb::CMs1006491Specdb::CMs1006492Specdb::CMs1006493Specdb::CMs1006494Specdb::CMs1006495Specdb::CMs1006496Specdb::CMs1006497Specdb::CMs1006498Specdb::CMs1006499Specdb::CMs1006500Specdb::CMs1006501Specdb::CMs1006502Specdb::CMs1006503Specdb::CMs1006504Specdb::CMs1006505Specdb::CMs1006506Specdb::CMs1006507Specdb::CMs1006508Specdb::CMs1006509Specdb::CMs1006510Specdb::NmrOneD245188Specdb::NmrOneD245189Specdb::NmrOneD245190Specdb::NmrOneD245191Specdb::NmrOneD245192Specdb::NmrOneD245193Specdb::NmrOneD245194Specdb::NmrOneD245195Specdb::NmrOneD245196Specdb::NmrOneD245197Specdb::NmrOneD245198Specdb::NmrOneD245199Specdb::NmrOneD245200Specdb::NmrOneD245201Specdb::NmrOneD245202Specdb::NmrOneD245203Specdb::NmrOneD245204Specdb::NmrOneD245205Specdb::NmrOneD245206Specdb::NmrOneD245207Specdb::MsMs23780Specdb::MsMs23781Specdb::MsMs23782Specdb::MsMs30578Specdb::MsMs30579Specdb::MsMs30580615595D-RIBULOSE-1-PKeseler, I. M., Collado-Vides, J., Santos-Zavaleta, A., Peralta-Gil, M., Gama-Castro, S., Muniz-Rascado, L., Bonavides-Martinez, C., Paley, S., Krummenacker, M., Altman, T., Kaipa, P., Spaulding, A., Pacheco, J., Latendresse, M., Fulcher, C., Sarker, M., Shearer, A. G., Mackie, A., Paulsen, I., Gunsalus, R. P., Karp, P. D. (2011). "EcoCyc: a comprehensive database of Escherichia coli biology." Nucleic Acids Res 39:D583-D590.21097882van der Werf, M. J., Overkamp, K. M., Muilwijk, B., Coulier, L., Hankemeier, T. (2007). "Microbial metabolomics: toward a platform with full metabolome coverage." Anal Biochem 370:17-25.17765195Winder, C. L., Dunn, W. B., Schuler, S., Broadhurst, D., Jarvis, R., Stephens, G. M., Goodacre, R. (2008). "Global metabolic profiling of Escherichia coli cultures: an evaluation of methods for quenching and extraction of intracellular metabolites." Anal Chem 80:2939-2948.18331064L-fuculose phosphate aldolaseP0AB87FUCA_ECOLIfucAhttp://ecmdb.ca/proteins/P0AB87.xmlL-fuculokinaseP11553FUCK_ECOLIfucKhttp://ecmdb.ca/proteins/P11553.xmlD-Ribulose-1-phosphate <> Glycolaldehyde + Dihydroxyacetone phosphateDARABALDOL-RXND-Ribulose + Adenosine triphosphate > Hydrogen ion + D-Ribulose-1-phosphate + ADPDARABKIN-RXND-Ribulose + Adenosine triphosphate + D-Ribulose > Adenosine diphosphate + Hydrogen ion + D-Ribulose-1-phosphate + ADPPW_R003841D-Ribulose-1-phosphate <> Glycolaldehyde + Glycerone phosphatePW_R005956D-Ribulose + Adenosine triphosphate > D-Ribulose-1-phosphate + Adenosine monophosphate + Hydrogen ionPW_R005955