2.02012-05-31 13:58:31 -06002015-06-03 15:54:22 -0600ECMDB03335M2MDB000490IDPIDP is an inosine nucleotide containing a pyrophosphate group esterified to the C5 of the sugar moiety.5'-IDPIDPInosine 5'-(trihydrogen diphosphate)Inosine 5'-(trihydrogen diphosphoric acid)Inosine 5'-(trihydrogen pyrophosphate)Inosine 5'-(trihydrogen pyrophosphoric acid)Inosine 5'-diphosphateInosine 5'-diphosphoric acidInosine 5'-pyrophosphateInosine 5'-pyrophosphoric acidInosine diphosphateInosine diphosphoric acidInosine pyrophosphateInosine pyrophosphoric acidRiboxinRiboxineC10H14N4O11P2428.1859428.013430334[({[(2R,3S,4R)-3,4-dihydroxy-5-(6-oxo-6,9-dihydro-3H-purin-9-yl)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]phosphonic acid{[(2R,3S,4R)-3,4-dihydroxy-5-(6-oxo-3H-purin-9-yl)oxolan-2-yl]methoxy(hydroxy)phosphoryl}oxyphosphonic acid86-04-4O[C@@H]1[C@@H](COP(O)(=O)OP(O)(O)=O)OC([C@@H]1O)N1C=NC2=C1NC=NC2=OInChI=1S/C10H14N4O11P2/c15-6-4(1-23-27(21,22)25-26(18,19)20)24-10(7(6)16)14-3-13-5-8(14)11-2-12-9(5)17/h2-4,6-7,10,15-16H,1H2,(H,21,22)(H,11,12,17)(H2,18,19,20)/t4-,6-,7-,10?/m1/s1JPXZQMKKFWMMGK-VTHZCTBJSA-NSolidCytosollogp-0.99logs-2.00solubility4.26e+00 g/llogp-3.6pka_strongest_acidic2.65pka_strongest_basic1.73iupac[({[(2R,3S,4R)-3,4-dihydroxy-5-(6-oxo-6,9-dihydro-3H-purin-9-yl)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]phosphonic acidaverage_mass428.1859mono_mass428.013430334smilesO[C@@H]1[C@@H](COP(O)(=O)OP(O)(O)=O)OC([C@@H]1O)N1C=NC2=C1NC=NC2=OformulaC10H14N4O11P2inchiInChI=1S/C10H14N4O11P2/c15-6-4(1-23-27(21,22)25-26(18,19)20)24-10(7(6)16)14-3-13-5-8(14)11-2-12-9(5)17/h2-4,6-7,10,15-16H,1H2,(H,21,22)(H,11,12,17)(H2,18,19,20)/t4-,6-,7-,10?/m1/s1inchikeyJPXZQMKKFWMMGK-VTHZCTBJSA-Npolar_surface_area222.26refractivity82.64polarizability33.75rotatable_bond_count6acceptor_count12donor_count6physiological_charge-3formal_charge0Purine metabolismec00230Specdb::CMs12469Specdb::CMs38574Specdb::CMs152384Specdb::NmrOneD135610Specdb::NmrOneD135611Specdb::NmrOneD135612Specdb::NmrOneD135613Specdb::NmrOneD135614Specdb::NmrOneD135615Specdb::NmrOneD135616Specdb::NmrOneD135617Specdb::NmrOneD135618Specdb::NmrOneD135619Specdb::NmrOneD135620Specdb::NmrOneD135621Specdb::NmrOneD135622Specdb::NmrOneD135623Specdb::NmrOneD135624Specdb::NmrOneD135625Specdb::NmrOneD135626Specdb::NmrOneD135627Specdb::NmrOneD135628Specdb::NmrOneD135629Specdb::MsMs24977Specdb::MsMs24978Specdb::MsMs24979Specdb::MsMs31535Specdb::MsMs31536Specdb::MsMs31537Specdb::MsMs2294628Specdb::MsMs2294629Specdb::MsMs2294630Specdb::MsMs2641573Specdb::MsMs2641574Specdb::MsMs2641575HMDB03335644173559208C0010417808IDPIDPKeseler, I. M., Collado-Vides, J., Santos-Zavaleta, A., Peralta-Gil, M., Gama-Castro, S., Muniz-Rascado, L., Bonavides-Martinez, C., Paley, S., Krummenacker, M., Altman, T., Kaipa, P., Spaulding, A., Pacheco, J., Latendresse, M., Fulcher, C., Sarker, M., Shearer, A. G., Mackie, A., Paulsen, I., Gunsalus, R. P., Karp, P. D. (2011). "EcoCyc: a comprehensive database of Escherichia coli biology." Nucleic Acids Res 39:D583-D590.21097882Kanehisa, M., Goto, S., Sato, Y., Furumichi, M., Tanabe, M. (2012). "KEGG for integration and interpretation of large-scale molecular data sets." Nucleic Acids Res 40:D109-D114.22080510Bennett, B. D., Kimball, E. H., Gao, M., Osterhout, R., Van Dien, S. J., Rabinowitz, J. D. (2009). "Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli." Nat Chem Biol 5:593-599.19561621Ishii, N., Nakahigashi, K., Baba, T., Robert, M., Soga, T., Kanai, A., Hirasawa, T., Naba, M., Hirai, K., Hoque, A., Ho, P. Y., Kakazu, Y., Sugawara, K., Igarashi, S., Harada, S., Masuda, T., Sugiyama, N., Togashi, T., Hasegawa, M., Takai, Y., Yugi, K., Arakawa, K., Iwata, N., Toya, Y., Nakayama, Y., Nishioka, T., Shimizu, K., Mori, H., Tomita, M. (2007). "Multiple high-throughput analyses monitor the response of E. coli to perturbations." Science 316:593-597.17379776Hlushko LV, Makovets'ka TI, Neiko IeM: [The dynamics of the glycocholic acid content of the bile in patients with chronic inactive hepatitis] Lik Sprava. 1995 May-Jun;(5-6):152-4.8630789Takada, Masao; Kashiwa, Kenichi. Nucleoside 5'-pyrophosphates. Jpn. Tokkyo Koho (1971), 3 pp. CODEN: JAXXAD JP 46021587 19710618 Showa. CAN 75:130076 AN 1971:530076 CAPLUS6-phosphofructokinase isozyme 2P06999K6PF2_ECOLIpfkBhttp://ecmdb.ca/proteins/P06999.xmlNucleoside diphosphate kinaseP0A763NDK_ECOLIndkhttp://ecmdb.ca/proteins/P0A763.xml6-phosphofructokinase isozyme 1P0A796K6PF1_ECOLIpfkAhttp://ecmdb.ca/proteins/P0A796.xmlUridine kinaseP0A8F4URK_ECOLIudkhttp://ecmdb.ca/proteins/P0A8F4.xmlPutative ribosome biogenesis GTPase RsgAP39286RSGA_ECOLIrsgAhttp://ecmdb.ca/proteins/P39286.xmlAdenylate kinaseP69441KAD_ECOLIadkhttp://ecmdb.ca/proteins/P69441.xmlUPF0244 protein yjjXP39411YJJX_ECOLIyjjXhttp://ecmdb.ca/proteins/P39411.xmlNucleoside diphosphate kinaseP0A763NDK_ECOLIndkhttp://ecmdb.ca/proteins/P0A763.xmlWater + Inosine triphosphate > Hydrogen ion + IDP + PhosphateRXN0-5073Adenosine monophosphate + Inosine triphosphate <> ADP + IDPAdenosine triphosphate + IDP <> ADP + Inosine triphosphateR00722Inosine triphosphate + Cytidine <> IDP + Cytidine monophosphateR00962Inosine triphosphate + Uridine <> IDP + Uridine 5'-monophosphateR00970Inosine triphosphate + D-Tagatose 6-phosphate <> IDP + D-Tagatose 1,6-bisphosphateR0323948 mM Na2HPO4, 22 mM KH2PO4, 10 mM NaCl, 45 mM (NH4)2SO4, supplemented with 1 mM MgSO4, 1 mg/l thiamine·HCl, 5.6 mg/l CaCl2, 8 mg/l FeCl3, 1 mg/l MnCl2·4H2O, 1.7 mg/l ZnCl2, 0.43 mg/l CuCl2·2H2O, 0.6 mg/l CoCl2·2H2O and 0.6 mg/l Na2MoO4·2H2O. 4 g/L GlucoBioreactor, pH controlled, O2 and CO2 controlled, dilution rate: 0.2/h74.7uM0.037 oCBW25113Stationary Phase, glucose limited2988000Ishii, N., Nakahigashi, K., Baba, T., Robert, M., Soga, T., Kanai, A., Hirasawa, T., Naba, M., Hirai, K., Hoque, A., Ho, P. Y., Kakazu, Y., Sugawara, K., Igarashi, S., Harada, S., Masuda, T., Sugiyama, N., Togashi, T., Hasegawa, M., Takai, Y., Yugi, K., Arakawa, K., Iwata, N., Toya, Y., Nakayama, Y., Nishioka, T., Shimizu, K., Mori, H., Tomita, M. (2007). "Multiple high-throughput analyses monitor the response of E. coli to perturbations." Science 316:593-597.17379776Gutnick minimal complete medium (4.7 g/L KH2PO4; 13.5 g/L K2HPO4; 1 g/L K2SO4; 0.1 g/L MgSO4-7H2O; 10 mM NH4Cl) with 4 g/L glucoseShake flask and filter culture23.8uM0.037 oCK12 NCM3722Mid-Log Phase952000Bennett, B. D., Kimball, E. H., Gao, M., Osterhout, R., Van Dien, S. J., Rabinowitz, J. D. (2009). "Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli." Nat Chem Biol 5:593-599.19561621